BAC Information

Click to search

BAC

Clone NameMSMg01-167E20
Chromosome14 (Build37)
Map Location 10,740,833 - 10,878,201
singlet/doubletdoublet
Overlap geneFhit
Upstream geneLOC100041948, LOC100042415
Downstream geneLOC100041974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167E20.T7 (MSMg01no167_e20.b1)MSMg01-167E20.TJ (MSMg01no167_e20.g1)
ACCAG364836AG364837
length737717
length of high quality
(start - end)		440 (36 - 475)612 (78 - 689)
definitionCHROMAT_FILE: MSMg01no167_e20.b1 PHD_FILE: MSMg01no167_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:02 2005CHROMAT_FILE: MSMg01no167_e20.g1 PHD_FILE: MSMg01no167_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,740,833 - 10,741,267)(10,877,590 - 10,878,201)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAGG
TAGTCCGTGTAAAGTTGTCAGCACAGTGCCTGACACCTAATAATATGTCA
CCTTGAACATGGCTTAATGTTGCTCTTCTGATTCTTCCGTAGCTCTTTAT
TGACGTGATATAAAATGTCCCAGAATCTGACTCTTCAGCCTTCTTGGGTC
ACTAATAATTCTATGACCTTGAGGACTACACTTAGCTGCACATGACCTTG
TTCCCTTAACTATGAAATTAAGAACATTCATCTAAGTCAGGGAGTGTTAA
ATCTGTTCTGAGAAATGTTGCTTCCAAGTAAGTAGGCCAAGCTGACAGAG
CCCTGCAAACTTGTCTGTGTTCATCCCACTGGCTTCGATCTGATTCTCAG
ATCTGACCTTTGATACAAGATTATGCTCACACTAAGGCTTTTCACACACA
CACACACACTCACACACACACACACACACACTCAAAGAAAGAAAGAGAAA
GAGAGAAAAGAGAAAAAGAGAAAGCAAGAGAGACAGATGTATATCGAGAG
ACAGACAGACAGAGTTCATAGGTGAGTTACTAGAGTAGTAGGTATCATCT
ACTCTCTCAACCCTAATAGGGGCTAATTAGGGTCATGAAGCTAAGTAGCC
ATTTATCACCTACTCACTTCAAGTTTGTCTTATTTTTGAAACTTGTACTG
AAACCTGCTGTACTTAGCCCATATCAACGATATCCCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTAGAGGTTTTGATAGGTTG
TTAGGTCAGACATGATCAGACATGATAGTGGGCAATGAGTAGCTTTCAAA
GGGACTAAAACTAACCCAAAATAATTCTGGTCCATGATGTGTTCTTTACT
CCGAAGTCATCCGGCCTTGAATTCATTGAATTCAAATTAGACATTGTATA
GCAGAAAGTGAATTTGAATTATGTATGCAAATTTTATAGTATGTGTCATA
AGCATGAATATACAAAGTAATGTGTTTATTCTCTCCCCCAAAATGGTGTA
CCCATATAAGAGACCTGAATTGTATCCCTCTTTAATGTATTCATGGTATA
CAAAGAAATTGCAAATTCCTCTTAGGTCACCAAAGCCAATTATAGTCTAA
CATTCAATGGGTAATATTGGGCTGAAATTAGCAAACACTTTTGACAATAA
GTGTAAATAGACCATGTCATGTCAAGAAAGAAAATGTATTTGGATTTTAC
AAAACTTCACATAATGCAGAGGTATCAATTTTGCATTTTTCTTAAGCTAT
ATTAAATCATTCTACTTTGAGCAACCTTTCTTTCCATAGTTTCATTTGAT
AAGTATTCATCCTCCAATGATAACATATATGCACTTTCTTTAGTAGGAGG
AGCTGTAATTTTCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_e20.b1 MSMg01no167_e20.b1 CHROMAT_FILE:
MSMg01no167_e20.b1 PHD_FILE: MSMg01no167_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:02 2005
         (440 letters)



>mm_chr14_10740629_10741468
          Length = 840

 Score =  795 bits (411), Expect = 0.0
 Identities = 429/435 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaggtagtccgtgtaaagttgtcagcacagtgcctgacacctaataatatgtc 64
           |||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaggtagtaagtgcaaagttgtcagcacagtgcctgacacctaataatatgtc 264

                                                                       
Query: 65  accttgaacatggcttaatgttgctcttctgattcttccgtagctctttattgacgtgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accttgaacatggcttaatgttgctcttctgattcttccgtagctctttattgacgtgat 324

                                                                       
Query: 125 ataaaatgtcccagaatctgactcttcagccttcttgggtcactaataattctatgacct 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataaaatgtcccggaatctgactcttcagccttcttgggtcactaataattctatgacct 384

                                                                       
Query: 185 tgaggactacacttagctgcacatgaccttgttcccttaactatgaaattaagaacattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaggactacacttagctgcacatgaccttgttcccttaactatgaaattaagaacattc 444

                                                                       
Query: 245 atctaagtcagggagtgttaaatctgttctgagaaatgttgcttccaagtaagtaggcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atctaagtcagggagtgttaaatctgttctgagaaatgttgcttccaagtaagtaggcca 504

                                                                       
Query: 305 agctgacagagccctgcaaacttgtctgtgttcatcccactggcttcgatctgattctca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctgacagagccctgcaaacttgtctgtgttcatcccactggcttcgatctgattctca 564

                                                                       
Query: 365 gatctgacctttgatacaagattatgctcacactaaggcttttcacacacacacacacac 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatctgagctttgatacaagattatgctcacactaaggcttttcacacacacacacacac 624

                          
Query: 425 tcacacacacacaca 439
            ||||||||||||||
Sbjct: 625 acacacacacacaca 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no167_e20.g1 MSMg01no167_e20.g1 CHROMAT_FILE:
MSMg01no167_e20.g1 PHD_FILE: MSMg01no167_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:02 2005
         (612 letters)



>mm_chr14_10877390_10878401
          Length = 1012

 Score = 1137 bits (588), Expect = 0.0
 Identities = 606/612 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttagaggttttgataggttgttaggtcagacatgatcagacatgatagtgggcaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 atcttagaggttttgataggttgttaggtcagacatgatcagacatgatagtgggcaatg 753

                                                                       
Query: 61  agtagctttcaaagggactaaaactaacccaaaataattctggtccatgatgtgttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 agtagctttcaaagggactaaaactaacccaaaataattctggtccatgatgtgttcttt 693

                                                                       
Query: 121 actccgaagtcatccggccttgaattcattgaattcaaattagacattgtatagcagaaa 180
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 692 actccaaagtcatccggccttgaatccattgaattcaaattagacattgtatagcagaaa 633

                                                                       
Query: 181 gtgaatttgaattatgtatgcaaattttatagtatgtgtcataagcatgaatatacaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gtgaatttgaattatgtatgcaaattttatagtatgtgtcataagcatgaatatacaaag 573

                                                                       
Query: 241 taatgtgtttattctctcccccaaaatggtgtacccatataagagacctgaattgtatcc 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 572 taatgtgtttattctctcccccaaaatggtgtatccatataagagacctgaattgtatcc 513

                                                                       
Query: 301 ctctttaatgtattcatggtatacaaagaaattgcaaattcctcttaggtcaccaaagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctctttaatgtattcatggtatacaaagaaattgcaaattcctcttaggtcaccaaagcc 453

                                                                       
Query: 361 aattatagtctaacattcaatgggtaatattgggctgaaattagcaaacacttttgacaa 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 452 aattatagtctaacattcaatgggcaatattgggctgaaattagcaaacacttttgacaa 393

                                                                       
Query: 421 taagtgtaaatagaccatgtcatgtcaagaaagaaaatgtatttggattttacaaaactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 taagtgtaaatagaccatgtcatgtcaagaaagaaaatgtatttggattttacaaaactt 333

                                                                       
Query: 481 cacataatgcagaggtatcaattttgcatttttcttaagctatattaaatcattctactt 540
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 332 cacataatgcagaggtatcaatttcgcatttttcttaagctatattaaatcattctactt 273

                                                                       
Query: 541 tgagcaacctttctttccatagtttcatttgataagtattcatcctccaatgataacata 600
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 272 tgagcaacctttctttccatagtttcatttgataagtattcatcctacaatgataacata 213

                       
Query: 601 tatgcactttct 612
           ||||||||||||
Sbjct: 212 tatgcactttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |