BAC Information

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BAC

Clone NameMSMg01-167P07
Chromosome14 (Build37)
Map Location 121,231,268 - 121,231,729
singlet/doubletsinglet
Overlap genenone
Upstream geneHs6st3, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a, LOC668835, LOC668837
Downstream geneRanbp5, Farp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9, LOC668843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167P07.T7 (MSMg01no167_p07.b1)MSMg01-167P07.TJ (MSMg01no167_p07.g1)
ACCAG365285AG365286
length724748
length of high quality
(start - end)
511 (22 - 532)463 (77 - 539)
definitionCHROMAT_FILE: MSMg01no167_p07.b1 PHD_FILE: MSMg01no167_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:51 2005CHROMAT_FILE: MSMg01no167_p07.g1 PHD_FILE: MSMg01no167_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATTTCGAGAGGATCCGCGGAATTCATGAAATTCCCGGGCAAA
TGGATGGATCTGGAGGATATCATCCTGAGTGATGTAACTCAATCACACAA
GAACACACATGATATGCACTCACTGATAAGTGGATATTAGCCCAGAAACT
TAGAATATCCAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAACG
AAGACCAAAGTGTGGATACTTTGCTCCTTCTTAGAATGGGGAACAAAATA
CCCATGGAAGGAGTTACAGAGACAAAGTTCGGTGCTGAGACGGAAGATTA
GACCATCCAGAGACTGTCCCACCTGGGGATCCATCCCATATACAACCACC
AAACCCAGATCTATTGCATATGCCAGCAAGATTTTGCTGACACCACCCTG
ACATAGCTCTCTCTTGTGAGGCTATTCCAGTGCCTGGCAAATACAGAAGG
GGATGCTCACAGTCATCTGTTGGATGGAACACAGGGCCCCTAATGAAGGA
GCTAGAGAAAGTACCCAAGGACCTAAGGGGGTCTGCAATCCTATAGGAGG
AACAACGATATGAACTAACCAGTACTCCCAGAGCTCGTGTCTCTAGCTGC
ATTTGTAGCAGAGGATGGCCTAGTCTTTTCTTCCCGTTATGACAGCCCCT
TGGTACTGTTAAACACCTCTGCCCCCACCATGTGTTTTATTTCCTTTTAT
TATTCTTTTCTTTTTTTTTCTCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGGCTGACTCATTCTCTGAGC
AGCTGGCCTCACTTGTGGTTTGTGCAAACCCACGCTGAGAAGTTGAGGCC
AGGCTCTGGTCAAGGGCTGGGTCTAATGCAACCCTAGGGCAGCTGGGTCG
CTTGGTATTATCTCCTGTCTTCCTGCTTTCTTCTCATTGAACTAAACAGC
TAGGGGGCAGGTCCTCAGTCAGCATCCACAAAGCCACTGCATACATGGAG
CATTCCAACACACTAGGAAGGCTTAGCTTTCTGTTTAGAATTCTAGCAAA
CAAGCTACGAACGTTTAAAAAGACAACCCCCTTCTCTCCGGCTCAGTGAA
AGCAAAACCAGGCACCCCAATCAATAAATCATTAACTTAAAGGACGGCCT
TTCGAGGCTCGCTGCCTGGCTTGCTTTGCCAAGTGACAGAAGGTTCACTG
ACTTCAACGTGGAAAGGAAGTTGGTAATGATTTCCCCTAGCTCGCGAACT
CTTGCCGCGCTTGCGCTGACGGTGCAGGTACTTATAGCGAGGCTATATCG
CCCTCTCGTGTACGTTGTGTGCATAACCTGTGTTGCCTTTAGCTTTGACC
CCCATATTATATTCCCGCACCATATCATACTGAATCTCCTGTTGTGTCCT
ATTGTAACTGTTGTATAGCCCCCACTCTTTCTCCGTCACTCCTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_p07.g1 MSMg01no167_p07.g1 CHROMAT_FILE:
MSMg01no167_p07.g1 PHD_FILE: MSMg01no167_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:51 2005
         (463 letters)



>mm_chr14_121231068_121231929
          Length = 862

 Score =  828 bits (428), Expect = 0.0
 Identities = 455/464 (98%), Gaps = 3/464 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggggctgactcattctctgagcagctggcctcacttgtggtttgtgcaaacccacgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tgggggctgactcattctctgagcagctggcctcacttgtggtttgtgcaaacccacgct 603

                                                                       
Query: 61  gagaagttgaggccaggctctggtcaagggctgggtctaatgcaaccctagggcagctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gagaagttgaggccaggctctggtcaagggctgggtctaatgcaaccctagggcagctgg 543

                                                                       
Query: 121 gtcgcttggtattatctcct-gtcttcctgctttcttctcattgaactaaacagctaggg 179
           |||||||  |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gtcgctt-atattatct-ctggtcttcctgctttcttctcattgaactaaacagctaggg 485

                                                                       
Query: 180 ggcaggtcctcagtcagcatccacaaagccactgcatacatggagcattccaacacacta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggcaggtcctcagtcagcatccacaaagccactgcatacatggagcattccaacacacta 425

                                                                       
Query: 240 ggaaggcttagctttctgtttagaattctagcaaacaagctacgaacgtttaaaaagaca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ggaaggcttagctttctgtttagaattctagcaaacaagctacgaacgtttaaaaagaca 365

                                                                       
Query: 300 acccccttctctccggctcagtgaaagcaaaaccaggcaccccaatcaataaatcattaa 359
           ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||
Sbjct: 364 acccccttctctccggctcagtgaaagcaaaaccaggcagcaaaatcaataaatcattaa 305

                                                                       
Query: 360 cttaaaggacggcctttcgaggctcgctgcctggcttgctttgccaagtgacagaaggtt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 304 cttaaaggacggcctttcgaggctcgctgcctggcttgctttgccaagtgacagaagggt 245

                                                       
Query: 420 cactgacttcaacgtggaaaggaagttggtaatgatttccccta 463
           ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 244 cactgacttcaccgtggaaaggaagttggtaatgatttccccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 862
Length adjustment: 10
Effective length of query: 453
Effective length of database: 852
Effective search space:   385956
Effective search space used:   385956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)