BAC Information

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BAC

Clone NameMSMg01-168H06
Chromosome14 (Build37)
Map Location 24,635,465 - 24,759,628
singlet/doubletdoublet
Overlap geneKcnma1
Upstream gene1700112E06Rik
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168H06.T7 (MSMg01no168_h06.b1)MSMg01-168H06.TJ (MSMg01no168_h06.g1)
ACCAG365632AG365633
length721722
length of high quality
(start - end)
322 (48 - 369)241 (76 - 316)
definitionCHROMAT_FILE: MSMg01no168_h06.b1 PHD_FILE: MSMg01no168_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:42 2005CHROMAT_FILE: MSMg01no168_h06.g1 PHD_FILE: MSMg01no168_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,635,465 - 24,635,769)(24,759,388 - 24,759,628)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCTTGTTAACAAAAGCAGTCATCCCACCTCAGGAAAATCGCCA
CTGTGATTTAGGACCTAGTCAAATCTGTGCCTATAGAACTCACCGGCTGA
GCATTTGTCTGCCTTTTCCATTTGCTGAACTTGGATGGGGTCTGAATAGA
GGTCAGAAAGCTGTTCTACTTTGCCCATCTATCTGACTTCCTTTTGTTTC
CATTTGAAAACCTAAAGCCTAGCAGGGCAAAGAGGCATGATGAAACAAAA
AGATGGCCCAGTCAGTGATTAGGCATATGGAAGGTAGACAGCTACTCCTC
TAAGCATATTTTTTTACCCCACCCACCCCCTGGCTGAGATCAGAAAGTTC
AGCTACCTAAGACTCTGGGTCCTCACTCTAACTGAATCTAGGCTCCTAGT
ACAGCAGTCAAATAGGAGATTCTGGTGTTACTATGAAATTTAACAATTAC
TTAATAGCTAGGGGAGAGACAACTTGACTTTTATTTCTATGGGGATCAGA
AAACTTCTGTTCCTTCTAGACAACCTGCAATGAGACTAAACATAGCCTAC
AGAACTTAAGCTGTCTCCCTGTCAGCCCCAGGCCCACTGGGCTCCTCTGT
GGAGCCCGAGATCCCTCCAACCCTGNACACTGAAAGAAGCTAGGCAGCTA
TGAGAGTGTCCTTTCTCTAGG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAGGCAAGGATTCCTTGTCA
TCCATATGGGAGGAAAAGCTCCAGGCCCAAGCATTCTGCTAACAATGTCA
GAGCCCTCAGCTGGTCTTTCAAGTATTTAGTGGACCTGGGGACAATGTGC
ACAGACAGAGGAATCCCAGCTCCCTCTCAGCCTGGCTGCTCATGCTAGGG
TCTGCAATGAAAGCAAAGGCACAGCCACCCTGTGCACACTAGCTGGCTAG
GAGGCTGGGGCTTTTGAATTTCAGCTGTTTGAGCTACCTACGTGTTTAAA
AAGCCTTTTCTTTTTTTCCCAGACTAAACTCTGTTTCTTCAGCCTGGGCA
CAAATCAAAAATAGTTGATTTTATTTAATTGACTTCAGTTTAGAAATAAA
AAAAGTCACCTTTGGGTTGAGATCGAGAATGGAAAGTTTCAGGGCATAAG
GGTAATTTTGATTTTTCTTCTTTCTTCTGGGTCTGTTCTAGGCAAGGGCA
GTTGAGGTGCTTTCATGAATGTTATGTGTAAGTATGTACCATGTGCCTCA
CCTCTTTATGGGCCCGAGATGACCCCTCTGTTAAATTGATGCTAGGAAGA
TTCTTCCATCCTTCTAGCCCACTAGAGGGTTCGTATTATAGTTTACTCCG
ATAGCGTGCACATACGCAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_h06.b1 MSMg01no168_h06.b1 CHROMAT_FILE:
MSMg01no168_h06.b1 PHD_FILE: MSMg01no168_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:42 2005
         (322 letters)



>mm_chr14_24635261_24635982
          Length = 722

 Score =  551 bits (285), Expect = e-161
 Identities = 300/305 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccttgttaacaaaagcagtcatcccacctcaggaaaatcgccactgtgatttag 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccttgtttacaaaagcagtcatcccacctcaggaaaatcgccactgtgatttag 264

                                                                       
Query: 65  gacctagtcaaatctgtgcctatagaactcaccggctgagcatttgtctgccttttccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 gacctagtcaaatctgtgcctatagaactcaccggctgagcatttgtctgcattttccat 324

                                                                       
Query: 125 ttgctgaacttggatggggtctgaatagaggtcagaaagctgttctactttgcccatcta 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 ttgctgaacttggatggggtctgaatagaggtcagaaacctgttctactttgcccatcta 384

                                                                       
Query: 185 tctgacttccttttgtttccatttgaaaacctaaagcctagcagggcaaagaggcatgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgacttccttttgtttccatttgaaaacctaaagcctagcagggcaaagaggcatgat 444

                                                                       
Query: 245 gaaacaaaaagatggcccagtcagtgattaggcatatggaaggtagacagctactcctct 304
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 445 gaaacaaaaagatggcccagtcagtgaccaggcatatggaaggtagacagctactcctct 504

                
Query: 305 aagca 309
           |||||
Sbjct: 505 aagca 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no168_h06.g1 MSMg01no168_h06.g1 CHROMAT_FILE:
MSMg01no168_h06.g1 PHD_FILE: MSMg01no168_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:42 2005
         (241 letters)



>mm_chr14_24759188_24759828
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcaaaggcaaggattccttgtcatccatatgggaggaaaagctccaggcccaagcatt 60
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 441 aatcaaaggcaaggattccttgtcatccatgcgggaggaaaagctccaggcccaagcatt 382

                                                                       
Query: 61  ctgctaacaatgtcagagccctcagctggtctttcaagtatttagtggacctggggacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgctaacaatgtcagagccctcagctggtctttcaagtatttagtggacctggggacaa 322

                                                                       
Query: 121 tgtgcacagacagaggaatcccagctccctctcagcctggctgctcatgctagggtctgc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgcacagccagaggaatcccagctccctctcagcctggctgctcatgctagggtctgc 262

                                                                       
Query: 181 aatgaaagcaaaggcacagccaccctgtgcacactagctggctaggaggctggggctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgaaagcaaaggcacagccaccctgtgcacactagctggctaggaggctggggctttt 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)