BAC Information

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BAC

Clone NameMSMg01-168L16
Chromosome14 (Build37)
Map Location 86,803,062 - 86,962,419
singlet/doubletdoublet
Overlap geneLOC100043310, LOC100043311
Upstream geneLOC668603, LOC100043301, EG629815, LOC100043306, LOC100043778
Downstream geneDiap3, EG665324, Tdrd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168L16.T7 (MSMg01no168_l16.b1)MSMg01-168L16.TJ (MSMg01no168_l16.g1)
ACCAG365818AG365819
length735802
length of high quality
(start - end)
306 (49 - 354)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no168_l16.b1 PHD_FILE: MSMg01no168_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:10 2005CHROMAT_FILE: MSMg01no168_l16.g1 PHD_FILE: MSMg01no168_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,803,062 - 86,803,361)(86,962,179 - 86,962,419)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTCTAAGAAATTCTTGAAATGTATTATTCTCAGTTCATTGT
CAAGCACTTGTACATGTACACACACACACATACATTCTGTATAGAATTCT
TATCTGGGGTTTCTACTAAAGGACAAGCCTAGCTTCAGGAACTGGCTTTT
TGGATTGATACACGTATGAGCTGTCTTTTCAGATCAATAGATTATTGCTA
TTCAGGACATGATATTTGAGTTCAGAAAAGTAATGGCTGCAGGCAAAAAC
ATGAAGGGATTATTCTCTATTATTTGGCAATGGTTAGAATGGAAGAGGGA
GGNTTTTATTATTTTTTCCCTNANACANAAGCCCAATAAACTGTTAAGGA
TTTTTCTATAAACAACCGAACCTTCAAAAAAAAAATTGACTTGGGCGGGG
CGATCCTGCTTACACTTGGTACTGCATATTTTGATAGCCTTCTGCCTAGA
CTCCTCTTTCTGCCTCAGTCCAAGTCATATAACTTTTCTGACTTATAGTA
CTGCTTTTTTCTTAGCATTCTCCGAAACTTTGTGTTCTTTTTGACTATTG
CTTTTTTCCTCCTCCCCCTTTTACCCCCTTATATTTTTCACCTTTTCCCT
GCCTTTTTTCCCCCCCGCACTTTCTTTCTCTTACTTACCCGTTTCCCCCC
CCCCTTTTTTTTTTCCCTTTTTTTCTCGCTTTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTCTTTTTCCTCCCAACATGT
TGTTGAACAATATTCTCTGGGCAGAAAAAGCATCACTTTTACGAACAAGT
CTTATCTGCTTGTAAAATATCACTACAGTTGGGTGTGTTGACTGTTGGCA
TTCTCTCATAGAAGGAAGAGGACATAGCGAATCACTGGGCTCTAACCTGA
GCTAGTCCTCCAAGTCAGTTATTAGCACTTCTAATTGCACATTGCCTAGG
AGTTTTGGGAGAGAGTGTTTTTTCTNNCTTCCCTCCTTTTTTGTTGCCNN
GGTTTTTGGGTGGTTTCCCCNGGGGCGTTTCCCCTTTTGTTTTTTTTGTT
GTGTTTTTGTTTGGGTTGNGCCCCCATAAAAAAAAAAAAAACCCCTTTGT
GGGGGGTGGGGGGCCACCTTTACCCCTTTTTTTTTTCCACCCACTACTTT
ACTCTATCATAAATCATTTTTTTTCTTCCCCAAATTCTACTTTTTTCACC
ATTCACCCCTGTTCCCACTCTACCTCCTGACTTCTCTCGTTTATCCAATT
GTATTCTGTTTTCAATCCAATTTTTTTACTTACCCCCTTTTATCTCTTTA
ATCTCGTCCTGCGGGAAATTTTTTCCCTTTTTTATTTTACATCGACTCTT
TCCATTACATCTTATATTTCTTTTCTTTATCCCTCCCATGTACACTTGAA
GATATCTTAGGTTTCCTTATTAGAGATGTATCTATCGTTATATTGATCTT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_l16.b1 MSMg01no168_l16.b1 CHROMAT_FILE:
MSMg01no168_l16.b1 PHD_FILE: MSMg01no168_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:10 2005
         (306 letters)



>mm_chr14_86802858_86803563
          Length = 706

 Score =  549 bits (284), Expect = e-161
 Identities = 296/300 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattctaagaaattcttgaaatgtattattctcagttcattgtcaagcacttgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctaagaaattcttgaaatgtattattctcagttcattgtcaagcacttgta 264

                                                                       
Query: 65  catgtacacacacacacatacattctgtatagaattcttatctggggtttctactaaagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgtacacacacacacatacattctgtatagaattcttatctggggtttctactaaagg 324

                                                                       
Query: 125 acaagcctagcttcaggaactggctttttggattgatacacgtatgagctgtcttttcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaagcctagcttcaggaactggctttttggattgatacacgtatgagctgtcttttcag 384

                                                                       
Query: 185 atcaatagattattgctattcaggacatgatatttgagttcagaaaagtaatggctgcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcaatagattattgctattcaggacatgatatttgagttcagaaaagtaatggctgcag 444

                                                                       
Query: 245 gcaaaaacatgaagggattattctctattatttggcaatggttagaatggaagagggagg 304
           |||||||||||||||||||||||||||  |  ||||||||||||||||||||||||||||
Sbjct: 445 gcaaaaacatgaagggattattctctaaaacctggcaatggttagaatggaagagggagg 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no168_l16.g1 MSMg01no168_l16.g1 CHROMAT_FILE:
MSMg01no168_l16.g1 PHD_FILE: MSMg01no168_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:10 2005
         (242 letters)



>mm_chr14_86961979_86962620
          Length = 642

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtctttttcctcccaacatgttgttgaacaatattctctgggcagaaaaagcatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgtctttttcctcccaacatgttgttgaacaatattctctgggcagaaaaagcatcac 382

                                                                       
Query: 61  ttttacgaacaagtcttatctgcttgtaaaatatcactacagttgggtgtgttgactgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttacgaacaagtcttatctgcttgtaaaatatcactacagttgggtgtgttgactgtt 322

                                                                       
Query: 121 ggcattctctcatagaaggaagaggacatagcgaatcactgggctctaacctgagctagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcattctctcatagaaggaagaggacatagcgaatcactgggctctaacctgagctagt 262

                                                                       
Query: 181 cctccaagtcagttattagcacttctaattgcacattgcctaggagttttgggagagagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctccaagtcagttattagcacttctaattgcacattgcctaggagttttgggagagagt 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)