BAC Information

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BAC

Clone NameMSMg01-168P22
Chromosome14 (Build37)
Map Location 107,316,538 - 107,316,847
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
Downstream geneLOC668752, EG668754
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168P22.T7 (MSMg01no168_p22.b1)MSMg01-168P22.TJ (MSMg01no168_p22.g1)
ACCAG366007AG366008
length739790
length of high quality
(start - end)
313 (43 - 355)206 (77 - 282)
definitionCHROMAT_FILE: MSMg01no168_p22.b1 PHD_FILE: MSMg01no168_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:34 2005CHROMAT_FILE: MSMg01no168_p22.g1 PHD_FILE: MSMg01no168_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTCATGTGTATGTAAGTGTACATTTTAAAATTATAAAGAATTTTA
TGTTAACAAAGAAAGTTTACAGGTGCCATCTCCCTCAACTCCGTTTTAGG
TCCCTTTCTTTGGACTTGATTCCTTGTCTTTTGTATGGTCATTAATTCCA
TGTTATATCACTGAACTGCCTTAGATTTCTTTCTAGTGTGCTGCTTGAAC
ATTTAACAAGGTTTTCTTAGCGTTTCAGGTTCAATGAATTGGTGAAAGCT
GCAGTTATGTGCATTTCTTTTCTTTTCTTTTGAAAACTGAAGGGAATTGA
GGTGGTTAGGTGNNTCCCAANAACAAANCACTATTATAGTTTAAGGAAAA
AAAATAATTTGACGCCCGCTAAGAAAAAAAAAATGACCGGGGGGGGAGGG
TAGCAGCTTTGCAGCTGAGTACAAAAACATTTTGATGCCACAATAGCCCA
GCTACAAGAAGACTCAAAATACAGAGTACTTCTCGGATCGATATTTAAAG
ATTAGGCCCGGTTTCATGTCATTTACTACAACCCAACTATCTTATCCTGA
AGACAGAATCCCCAGCTACGTACTCCCAGCTTGTATTGCTATACAATATA
CCGTTTTCCTCCAATTTTTCCCCTCCCCCCTTACTTTGTTACCTTGCCTT
ATCTACCACTCTTTTTTTTTTCATTTTTTATCCTTTTTT
NCGCGATGCAGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTCTCGG
GGTGTAATAGTGGGGTGATGGGCAAGCAACGAATCGGGAGCTGTCACGCC
ATATCAGGTGCTGAAACGTCACGCTGCAGGTTATAAAAGCAGCACCATTT
TCCCGGTTCGGGATCTTCCTGAGAAGCAAGCAATAAAGCTTTTGCCGTGG
AAGATTCTGGTTTGTTGCGTCTTTCTTGCCGGTCGAGTGAGACGCAATAT
CTTACACGCGTTCTCGCGATATTTTTTTTAAGAACGTAGAAAACCTGAAT
CTTGTGTGGTTTTGNATAAATTCCCAAAAACAAAAACCCCTATTTATTTT
TAGAGTATGAGNTTTATTGGTNACCCCAAAAAAAAAAAAAAATTGGGGGG
GGGGGGGGGGTTTATCCATACTTTTACTGTATTTATTTATCATGCTGAAA
CCCCGTCCCTTTTTTATGAAAATTATTCTTCCTCTTGTAACCATTACCTC
CCCGATCGTCATACCCTCACATGGCCGATTAAATCCTTCCCAGCCTATTT
ACTATCTATTTATCCGACTAAATTTTCTTTCGTTACCTTTCCACAGCTCA
TATTTTTATGCTTTTTTAATTTTTTCTTTCTTCTACATCACAACTTTTTA
TTTGCTCCTTATGCACCCCATATATCTCTTTAACATAATCCCTCATTCTG
TCTCTGCGAGAAATATGTTCCTCTCATTCTATTATATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_p22.b1 MSMg01no168_p22.b1 CHROMAT_FILE:
MSMg01no168_p22.b1 PHD_FILE: MSMg01no168_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:34 2005
         (313 letters)



>mm_chr14_107316335_107317047
          Length = 713

 Score =  530 bits (274), Expect = e-155
 Identities = 301/310 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctcatgtgtatgtaagtgtacattttaaaattataaagaattttatgtta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctcatgtgtatgtaagtgtacattttaaaattataaagaattttatgtta 263

                                                                       
Query: 64  acaaagaaagtttacaggtgccatctccctcaactccgttttaggtccctttctttggac 123
           |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct: 264 acaaagaaagtttacaggtgccatctccctcaactctgttttaggtccttttctttcgac 323

                                                                       
Query: 124 ttgattccttgtcttttgtatggtcattaattccatgttatatcactgaactgccttaga 183
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 ttgattccttgtgttttgtatggtcattaattccatgttatatcactgaactgccttata 383

                                                                       
Query: 184 tttctttctagtgtgctgcttgaacatttaacaaggttttcttagcgtttcaggttcaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttctttctagtgtgctgcttgaacatttaacaaggttttcttagcgtttcaggttcaat 443

                                                                       
Query: 244 gaattggtgaaagctgcagttatgtgcatttcttttcttttcttttgaaaactgaaggga 303
           |||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 444 gaattggtgaaaactgcagttatgtgcatttccaatcttttcttttgaaaactgaaggga 503

                     
Query: 304 attgaggtgg 313
           ||||||||||
Sbjct: 504 attgaggtgg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)