BAC Information

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BAC

Clone NameMSMg01-169M04
Chromosome14 (Build37)
Map Location 96,555,099 - 96,555,327
singlet/doubletsinglet
Overlap geneKlhl1
Upstream geneLOC100043784, LOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169M04.T7 (MSMg01no169_m04.b1)MSMg01-169M04.TJ (MSMg01no169_m04.g1)
ACCAG366530AG366531
length712678
length of high quality
(start - end)
315 (44 - 358)230 (108 - 337)
definitionCHROMAT_FILE: MSMg01no169_m04.b1 PHD_FILE: MSMg01no169_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:32 2005CHROMAT_FILE: MSMg01no169_m04.g1 PHD_FILE: MSMg01no169_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATAACCAGCCACCAAATGCAGACACTATTGCATATGCCAGCAAGAT
TTTGCTGAAATGACCCTGATATAGCTGTCTCTTGTGAGGCTATGCCAGTG
TCTGGCAAATACAGAAGTGAATGCTCACAGTCATCTATTGGATGGAACAC
AGAGCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGAAGCTGAAGGGGTC
TGTAACCCTATGGGTGGAACAACAATATGAACTAACAAGTAACCCCCAGA
ACTCATATCTCTAGCTGCATATGTAGCAGAAGATGGCTCAGTCGGCCATC
ATTGGGAATATTTTTTTTCTTCCCCCCGCCCCTTTATATGCCCCAGTACA
GGGGAACGCCAGGGCCAAGAAGTAGGAATGAAAAGAGTAGGCAAGCAGAG
TGGGGTATGGTATTGTGGACTTTCAGGATAGCATTTGAATCCTCTTGAAG
GACTTTAAGAAATTCTGGATTTCCTGCATGTTGGGCTAGGAGCATTTTGC
TTTTTGTGTTTTCTTTGGCTGTTCTGTGAGTGTTTCCTATGGTATATTCT
GCACCTGAGATTCTCTCTTCTATCTCTTGCATTCTGTTGATGATGCTTGC
ATCTATGACTCCTGATTTATTTCCTAGATTTTCTATCTCCAGCGTTGTCT
CCTTTTGTGATT
TGGCGGCCGCCTGTTTCCCAAXXXXXXXXXXXXXXXXXXXXTTATCAGAA
AAATTCTTTTTATATCCCGTTTTTAATTGAGTTTATTACCTTACAATTAT
TGCGTGGGACAGCACATAGAGTCTGTTCTGAGAACTGTATGTATGTATGT
ATACATACAAAAATGGACAAAAATTATATCTATATCTACATATAAATTAG
CTCAATCTGATAAAAATATATTCAACAATAAAGTTAATTGAAAGTCACAT
AATTTAAGTTTGGCCTCAAAACAGCAGTTGGATCTGAGTAAGGTATCAAT
GTATTACTCTAAAGGCAGAATTAAACACACAAATGATATTTCTGATTCCC
CCCCCCCCACCCAAAGTTGTCATGTTTTGAGATGCAAAATTTCAAAGGAA
AAAAAAAAAAAAGCAAACATTTATTTCCATCTCTTCTATGCATTCATTCA
TACCCTAGGAATCTGGCAACTAGGAACTGCTAAATTCTCTAAATAAGAGA
GGCTGATATCTACATCTGACATTTTCATGAGTCTCACACAAAAAAAGATA
CTACACGCTTCTGAACAGGACAGAAAAGTATGGCTATAACTCGCCTATAT
ATCCAGAATATCACTGTGTATCATACATAATAATTTTTTATCAGATTTTG
CTTATATATGCCAATTCCTTAATCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_m04.g1 MSMg01no169_m04.g1 CHROMAT_FILE:
MSMg01no169_m04.g1 PHD_FILE: MSMg01no169_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:32 2005
         (230 letters)



>mm_chr14_96554899_96555528
          Length = 630

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacagcacatagagtctgttctgagaactgtatgtatgtatgtatacatacaaaaatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gacagcacatagagtctgttctgagaactgtatgtatgtatgtatacatacaaaaatgga 370

                                                                       
Query: 61  caaaaattatatctatatctacatataaattagctcaatctgataaaaatatattcaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caaaaattatatctatatctacatataaattagctcaatctgataaaaatatattcaaca 310

                                                                       
Query: 121 ataaagttaattgaaagtcacataatttaagtttggcctcaaaacagcagttggatctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ataaagttaattgaaagtcacataatttaagtttggcctcaaaacagcagttggatctga 250

                                                            
Query: 181 gtaaggtatcaatgtattactctaaaggcagaattaaacacacaaatga 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtaaggtatcaatgtattactctaaaggcagaattaaacacacaaatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)