BAC Information

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BAC

Clone NameMSMg01-170I19
Chromosome14 (Build37)
Map Location 68,021,990 - 68,022,302
singlet/doubletsinglet
Overlap geneEbf2
Upstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, EG628416
Downstream geneLOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170I19.T7 (MSMg01no170_i19.b1)MSMg01-170I19.TJ (MSMg01no170_i19.g1)
ACCAG367078AG367079
length769729
length of high quality
(start - end)
317 (45 - 361)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no170_i19.b1 PHD_FILE: MSMg01no170_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:32 2005CHROMAT_FILE: MSMg01no170_i19.g1 PHD_FILE: MSMg01no170_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACGTCGGAGGCTCCTCTATTGAATTCCCCCTTGATTAGCTTCTG
TAATATTTAACTTCATGCCATGCCGTAATTATTTAATAAAAGGTAAATAT
AAATTATACTTCAGGAGGGATATGACCTTTTACCTTAATGTTATGTTCTA
AAGAAAGACATAGATAAACAGAACCTATAGGTTGAAGCGTATTTTTAATT
TACTCTATTTTTGACTTGCCAGCAGATCTCTGTGTCCTTGTCAGCCAGAG
CATTGGCAGAACTTCACAGCATCCCATACTCCGTGTGGTACGGGAGGTTG
TAAATTTACAGTTATGTTGTCAGCCCCCGACCTGCTAGGTCCTTCGAGAC
AATCTTGGTGCTGGTCTTGGACACCTACATAAAATAATTGAGGTTTGCTT
GGCTCACCTTGGGTCCCCAAAGCCCGAGAACACCCAGGGTGATGGGGAAG
AGGGGGAGATGTTATTTTTTTTCCCCCCGCTTCCTTTCCTCTCTCTCTTT
CCTGCTCTTCCCTCCTTTCTCCTCCTTCCCCTTTCTCCCTTTTTCCCTCT
TTCTTCCTCCCTTCTCCTTTTTCTTTTCCCCTCCTCTCTCCTTCCTTCTT
CCCCCCTCTTTTCCCCCCTTCTCTTTCACTTTATTCTCTCTTCCCCTCTT
CTCCTTCTTCTTCTTCATCTCTCTCTATCCTTTCGCTTTTCTTGTCCTCT
ACCCCCCCTTCCCCTCCCC
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCATAGTCAGTGAGTCATGTTGCTGCT
GGGTTTCGCTTTTGTTGTTAAGATCTACAAGGGGGCCTCGGTGGTGAGAA
GTCACTTGCTATGACCTGAGTTGTATTCTCCGAAAACACATACTCTGCCG
CTTTAGACTGCCAACCCCAGTGTCTCGAACTGAAGCCTTTGGAAGATGGT
TGGCTTATCTGAGCTATGACATGGGGCCCTCATGGGGATATTTTTGTCCT
TATGAGAAAAGCCACCTGAGAGCTTGCTGTTTCTGTGCTTTATAAGGACA
CACAGAGAAGTTGTTTTTTTGGACCCCACCCCCCCCCATCATTAGAACCC
TTGCATCCTGACCCTCTGAGTTCAGAAATTCAACTATGAGAAAAAAATGA
AGTCCATGATTAAGCCCCTCAGTGGGTGGTACCCTGTTCTACTGTCCTAA
ATCGCTACTCGGCACAGGGTGGAAGCATCACTTTCCTTTCTACATTTATT
GCTATGGCGTTTTGGCCGTGTCAAGGCCTTGAGGACGATGTCTGCGCCTT
GCATATGATTTCTTCTTGTCATGTTTTTTTTTGTGTAATTTTTTCCTCCC
CGCTGTTTTCATTCCTTTCTCTTCCCCTTCTTCCTCCATTTCTTTCTCCT
TTCTTTTTTTCCCCTCCTTCTCTCACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_i19.b1 MSMg01no170_i19.b1 CHROMAT_FILE:
MSMg01no170_i19.b1 PHD_FILE: MSMg01no170_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:32 2005
         (317 letters)



>mm_chr14_68021786_68022502
          Length = 717

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcacgtcggaggctcctctattgaattcccccttgattagcttctgtaatattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcacgtcggaggctcctctattgaattcccccttgattagcttctgtaatattt 264

                                                                       
Query: 65  aacttcatgccatgccgtaattatttaataaaaggtaaatataaattatacttcaggagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacttcatgccatgccgtaattatttaataaaaggtaaatataaattatacttcaggagg 324

                                                                       
Query: 125 gatatgaccttttaccttaatgttatgttctaaagaaagacatagataaacagaacctat 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 gatatgaccttttaccttaatgttatgttctaaagaaagacatagataaacataacctat 384

                                                                       
Query: 185 aggttgaagcgtatttttaatttactctatttttgacttgccagcagatctctgtgtcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 aggttgaagcgtatttttaatttactctatttttgacttgccagcagatctctgtgtccc 444

                                                                       
Query: 245 tgtcagccagagcattggcagaacttcacagcatcccatactccgtgtggtacgggaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtcagccagagcattggcagaacttcacagcatcccatactccgtgtggtacgggaggt 504

                        
Query: 305 tgtaaatttacag 317
           |||||||||||||
Sbjct: 505 tgtaaatttacag 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)