BAC Information

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BAC

Clone NameMSMg01-170K23
Chromosome14 (Build37)
Map Location 30,161,825 - 30,162,142
singlet/doubletsinglet
Overlap geneCacna2d3
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218, Lrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170K23.T7 (MSMg01no170_k23.b1)MSMg01-170K23.TJ (MSMg01no170_k23.g1)
ACCAG367172AG367173
length712768
length of high quality
(start - end)
321 (48 - 368)41 (77 - 117)
definitionCHROMAT_FILE: MSMg01no170_k23.b1 PHD_FILE: MSMg01no170_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:42 2005CHROMAT_FILE: MSMg01no170_k23.g1 PHD_FILE: MSMg01no170_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGGTTTAGGATGCAGCACTGACGGCTTCTTTCACAGCCCCCA
ATGGCCAGATTCTTGTCCTTGCCAGGGTAATAACAGGCTGGGTCAAGGGA
ACATCCCCAAACTACTATGCAGGTCAAGGGAACATCCCCAAACTACTACC
CAGGTATCCCACAGTGACACTCTGTTCTACCATCATTATACCCATGCTTC
TACCTGTACTGGGACCTACTTTACAGGTCTTCCCTCCAGAATTAGAAAGC
AGAAGAATAAAAAAGGAGCCAAGTAAAAGCCATTAACTATAAAGATAAAA
TATAACTGATACAATATTGTACTATGAGGCCCCGCCACTATGATTTATTC
CTAACTTATATGACAAAGTTTTCTGGAAATCTTGAAATAGATAGGATGGC
ACAGTCCTATTTTCTTTTTCATTTTATAAATGTGTTGATCCAGTCAACGA
GCTCAGCAGATGATGCTTGTATTCATCACGTGCGTTGGTAAGACATGTGC
CTATCTCTAGACACTGTAGGTAATCTCCCTCTGGCTCTGCCAGTCTTCTT
CCCATGACATCTTTACTGCTGTGCACTCTCCCAAACCTTCTAAGAAGGGA
CGGGAGGTGGAGTTGAAATGAGAATACTGCCTTGCATATGGGCTTGTGAC
TCTCTGCATCCC
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGACATCCAAATGAGCATGCCT
CTTCCACCCTCTCTACTATTTACACGCAGCACATGCTGACAGAGGGGGAA
TGGGAGATGGATGTAGTCTTCTAAACAACCCTGCATTACAGAGTATGGCC
ACAGCTGTTTGAAATGGATTAAGAAGGGGCTAAAATATTGCAGGGAATAT
TAATGTTACAGGGCTTTTGTGGGTATCTGCACCATTATAGTTGTAAAAGC
CTGCTGCCGACCTAAGTCTGTTTGCCACATGAAGATGTTTTTTCCCTTTT
GAGTCCTGATTTATTATTTTTGCCCCCCCCCCCCCCGTTAATCTAAGGGC
ATCTAAAGCAAATAGCATCTGCAGCATACAGAAAAAAAATCCTCTGAGCC
TCCCCGAGCACCCTGTGAGAACTGATCCCTTTGCCAAGTTTACCGTGAAC
CTTATCTTCCTTATACAAATAGTGCCGACTTTTCTCTTCTCGCTGTATCA
ACGCCTGCTTAGAATTGCTCTCTTTCCTCTGAGCTTTCTTTCTAGGATTG
CTTTCTTTCCCCCCCCTTGACTTCCCTTCTCTTATTATCCCGTCTTTCTT
GAAACTTTCCAATAACCGCCTCCTCCCTGCTTTTTCTTTCGCTTCTCTCT
TCCCACTTTTTTATCTACCCTCTACATATCCCCACTTTCTTTTTTCCCTC
CCGTCCTCTCTCCCCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_k23.b1 MSMg01no170_k23.b1 CHROMAT_FILE:
MSMg01no170_k23.b1 PHD_FILE: MSMg01no170_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:42 2005
         (321 letters)



>mm_chr14_30161622_30162342
          Length = 721

 Score =  615 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctggtttaggatgcagcactgacggcttctttcacagcccccaatggccagat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctggtttaggatgcagcactgacggcttctttcacagcccccaatggccagat 263

                                                                       
Query: 64  tcttgtccttgccagggtaataacaggctgggtcaagggaacatccccaaactactatgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcttgtccttgccagggtaataacaggctgggtcaagggaacatccccaaactactatgc 323

                                                                       
Query: 124 aggtcaagggaacatccccaaactactacccaggtatcccacagtgacactctgttctac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggtcaagggaacatccccaaactactacccaggtatcccacagtgacactctgttctac 383

                                                                       
Query: 184 catcattatacccatgcttctacctgtactgggacctactttacaggtcttccctccaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catcattatacccatgcttctacctgtactgggacctactttacaggtcttccctccaga 443

                                                                       
Query: 244 attagaaagcagaagaataaaaaaggagccaagtaaaagccattaactataaagataaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attagaaagcagaagaataaaaaaggagccaagtaaaagccattaactataaagataaaa 503

                             
Query: 304 tataactgatacaatatt 321
           ||||||||||||||||||
Sbjct: 504 tataactgatacaatatt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)