BAC Information

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BAC

Clone NameMSMg01-170M19
Chromosome14 (Build37)
Map Location 105,261,629 - 105,414,868
singlet/doubletdoublet
Overlap genenone
Upstream genePou4f1, 2610206B13Rik, D130009I18Rik
Downstream geneLOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2, LOC620376, LOC100043469, Spry2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170M19.T7 (MSMg01no170_m19.b1)MSMg01-170M19.TJ (MSMg01no170_m19.g1)
ACCAG367250AG367251
length722740
length of high quality
(start - end)		323 (46 - 368)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no170_m19.b1 PHD_FILE: MSMg01no170_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:51 2005CHROMAT_FILE: MSMg01no170_m19.g1 PHD_FILE: MSMg01no170_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,261,629 - 105,261,948)(105,414,584 - 105,414,868)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTCTTCCTCTTTGCTTTGGTGATATAGTCTCAGACTCAGACC
CAAGAAACATTGTCTTCAAGGTAAGAAGGAGCAAAGAACAGGTCAGTTGG
AAAGTTTACAACTTTCAAACCTAGGGGCTGAATTCCTGTGTTTATCATAG
TCAACTTGAGAAGAGAATGCTCTACCCCTGCCCTCCGAGTCTCATCCTGT
CTTCAAAACCCAACTCGAGCACTTTCCTTTAACTCTCACATCCTCTCTGT
CATCTCTGAGTCCTCTCTCCAGACAAAGATTCTCCCTCCACTGAGTATCA
GCAGCACTTTGTTCATCTGTTAATATGGCACGCATCAGGATGTGCTGGAA
TAGGCACCTTGGTGCTATTGGATCACCATAGTCTCACTCTTCCTCCCGCT
CCCTCCATTCTGAGGAGAGCTAGGAAATCACCAGGAAGCAACTCCTGCTT
GCAGATTACTCATTAATAAATAAGATTGAAAATGCAGGTTCCCAGAGCTC
AAGACCTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTCNGTCCCCTCC
CTCCTCTTTTCCTTCCCTCCCCTCTCCCCCTCCTCTCCCTTCTCTCCTGT
CTCTTTCTTCCTCTCTTCCTTTTCTTTCTTTTCCTCTCCCCTTTCTTCCC
CTCTTCCCCTCCCCTTTCTCTC

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGTGGCATTCCTATGTGTGCTGTAAA
CTTTTTTCTTATTTTATTATTAGCTTTTAGATATCTGGCAGTCTTGGGCT
TCTTGGATGGTTTTGATACACCTTCAAGTTACGGAGACTCACCTGCCTTT
GTGTGGATGGATGGTAACTCTTGAGTGTGTGCTTTCTGACTTGACTGCCC
CCTAGAGGGTGTGCTGGATTTGAGAGATTTAATCAATGAATCTGACACCA
AAATGTTGGGCACTTGGCTTTGCCGTGAACTGCCTCTCCTTGTCCTTTGT
TATAACTGTTTCCTAATTTTGCCCCNNACGNGCCCACCTAACTCTGTAAG
TTGGGGTGAGGATGGAGAACACCCCAAAAAAAAAAAAAGACATCGTTGTC
GGGGGCCCGTTTACACTCCCGTTGTTTATCCATCCCTTATTGTCCCTTTT
GAGTTCCACCCTATTTCGTCCCTTGACCATTTCTCCCGTCATATCTTTTC
TCCTGTCCCGCCCCTCATATTATCCCTTCCTTTCCACCTTTTCCTCCCCT
TTCCTGCTCTCTTCTCTATTTCCCTCTTATTGTTATCTTTCCCTTATTTC
CTCTCCCTCCTTTCTCTTCCCTTCATCTGCTCCCCCTTCTACTACCCATT
TTTCTCTCTCTTTCTTTTTCTCTCCCACTTCTTCCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_m19.b1 MSMg01no170_m19.b1 CHROMAT_FILE:
MSMg01no170_m19.b1 PHD_FILE: MSMg01no170_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:51 2005
         (323 letters)



>mm_chr14_105261426_105262148
          Length = 723

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactttcttcctctttgctttggtgatatagtctcagactcagacccaagaaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttcttcctctttgctttggtgatatagtctcagactcagacccaagaaac 263

                                                                       
Query: 64  attgtcttcaaggtaagaaggagcaaagaacaggtcagttggaaagtttacaactttcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attgtcttcaaggtaagaaggagcaaagaacaggtcagttggaaagtttacaactttcaa 323

                                                                       
Query: 124 acctaggggctgaattcctgtgtttatcatagtcaacttgagaagagaatgctctacccc 183
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acctaggggccgaattcctgtgtttatcatagtcaacttgagaagagaatgctctacccc 383

                                                                       
Query: 184 tgccctccgagtctcatcctgtcttcaaaacccaactcgagcactttcctttaactctca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgccctccgagtctcatcctgtcttcaaaacccaactcgagcactttcctttaactctca 443

                                                                       
Query: 244 catcctctctgtcatctctgagtcctctctccagacaaagattctccctccactgagtat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catcctctctgtcatctctgagtcctctctccagacaaagattctccctccactgagtat 503

                               
Query: 304 cagcagcactttgttcatct 323
           ||||||||||||||||||||
Sbjct: 504 cagcagcactttgttcatct 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no170_m19.g1 MSMg01no170_m19.g1 CHROMAT_FILE:
MSMg01no170_m19.g1 PHD_FILE: MSMg01no170_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:51 2005
         (288 letters)



>mm_chr14_105414384_105415071
          Length = 688

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtggcattcctatgtgtgctgtaaacttttttcttattttattattagcttttagata 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 485 ttgtggcattcctatgtgtgctgtgaacttttttcttattttattattagcttttagata 426

                                                                       
Query: 61  tctggcagtcttgggcttcttggatggttttgatacaccttcaagttacggagactcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tctggcagtcttgggcttcttggatggttttgatacaccttcaagttacggagactcacc 366

                                                                       
Query: 121 tgcctttgtgtggatggatggtaactcttgagtgtgtgctttctgacttgactgccccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgcctttgtgtggatggatggtaactcttgagtgtgtgctttctgacttgactgccccct 306

                                                                       
Query: 181 agagggtgtgctggatttgagagatttaatcaatgaatctgacaccaaaatgttgggcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agagggtgtgctggatttgagagatttaatcaatgaatctgacaccaaaatgttgggcac 246

                                                        
Query: 241 ttggctttgccgtgaactgcctctccttgtcctttgttataactg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttggctttgccgtgaactgcctctccttgtcctttgttataactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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