BAC Information

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BAC

Clone NameMSMg01-170P07
Chromosome14 (Build37)
Map Location 94,892,414 - 94,892,691
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170P07.T7 (MSMg01no170_p07.b1)MSMg01-170P07.TJ (MSMg01no170_p07.g1)
ACCAG367353AG367354
length712716
length of high quality
(start - end)
310 (53 - 362)279 (77 - 355)
definitionCHROMAT_FILE: MSMg01no170_p07.b1 PHD_FILE: MSMg01no170_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:03 2005CHROMAT_FILE: MSMg01no170_p07.g1 PHD_FILE: MSMg01no170_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGGGTAGCTCTGAGCCCCATTTTTAATGGGTTTATT
TGATTTTCTGGAGTCCACCTTCTTGAGTTTTATATATATATATATATATT
GGATATTAGTCCCCTATATGATTTAGGATAGGTATAGATCCTTTTCCAAT
CTGTTGGTGGCCTTTTTGTCTTATTGAAGGTGTCTTTTGCATTACAGAAG
CTTTGCAATTTTATGAGGTCCCATTTGTGGATTCTTGATCTTAGAGCACA
AGCCATTGCTCTTCTATTTAGGATTTTTCCCCATGTCCATATTTTCAAGG
CTTTCCCCCTTTTTTTCCTCTCTNACTTNCCTGTCTCTGGTTTTATGTGG
AGTTCCTTGATCCACTTATATTTGAAAAAAAAACAAGGAGATAGTAGTGG
TTCAATTCGCATTCTTCTACATGTTAACTGCCAATTGTGCCAGCACCATT
TGTTGAAAATGCTGTCATTTTTCCACTGGATGGTTTTAGCTCCCTTGTCA
AAGATCAAGTGAACATAGGTGCGTGGGTTATTTCTGGGTCTTCAATTCTA
TTCCATCGGTCTACTTGTCTGTTACTACACCAGCACATGCAGGCTTTTGT
TTTTTTTTTTTCACACAAATGCTCTGTACCACTGCTTTACGTCGGTTATG
GTCATTCCAAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCCTTTTTTTCTCATAGCTTC
TGTTTGTCCGTAGCTTGTTGTCCCCTGTCTGTGTTGTCTGTGTGTTTTAC
GTGTTTGACTTGGATTCCTCTCTATTCCTAACAAAGGATTTTGTTTTGTT
TTGTTTTGTTTTGTTTTGTTTTTTGAATAGCAATGAAAATATCACATCAG
AAATGAAGAAAGATGCCTGGGCAGTGGTGACTCATGCCTTTAATCCCAGC
ACTTGGCAGGCAGAGGTTTTTTTTTTTCAGAATTCCAGGTGAGCCTGCTC
TACATATTAAGTTCGGTTCNAANCAGGNTCTCCAGAGAAACCTTGCCAAA
AAAGAAAAAGAAAGAAAGAAAGNTGAGTCNAAAAATGTCTACGGTAATCA
AATGGTTACCACAGCAAACAAATGCACACACATACACAGAGAGAGGGGGG
GGGCAAGGAACAATATTCACACTATTTTGGTCTAAGGGCATGGGAAAATG
TACACAACTTAAAGTTATTTATTTGGTTTAAGATGTAAAAGCTGATTGCA
TGGGGGAATTAAAGGCAAATAATTTTGGTGACAGCATTTTCTTAGAGGCA
CTTTATACCTGACCAAGCTGTGTACATAATATGAGAGAAGGACAAGTATG
TATTCTTATTTGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_p07.g1 MSMg01no170_p07.g1 CHROMAT_FILE:
MSMg01no170_p07.g1 PHD_FILE: MSMg01no170_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:03 2005
         (279 letters)



>mm_chr14_94892214_94892892
          Length = 679

 Score =  458 bits (237), Expect = e-133
 Identities = 267/285 (93%), Gaps = 14/285 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcctttttttctcatagcttctgtttgtccgtagcttgttgtcccctgtctgtgttg 60
           ||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||
Sbjct: 201 tcctcctttttttctcatagcttctgtttgtccgtagcttggtgtggtctgtctgtgttg 260

                                                                       
Query: 61  tctgtgtgttttacgtgtttgacttggattcctctctattcctaacaaaggattttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgtgttttacgtgtttgacttggattcctctctattcctaacaaaggattttgttt 320

                                                                       
Query: 121 tgttttgttttgttttgttttgttttttgaatagcaatgaaaatatcacatcagaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttttgttttgttttgttttgttttttgaatagcaatgaaaatatcacatcagaaatga 380

                                                                       
Query: 181 agaaagatgcctgggcagtggtgactcatgcctttaatcccagcacttggcaggcagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaagatgcctgggcagtggtgactcatgcctttaatcccagcacttggcaggcagagg 440

                                                        
Query: 241 -------tttttttttttcagaattccaggtgagcctgctctaca 278
                  ||||       |||||||||||||||||||||||||||
Sbjct: 441 caggcagtttt-------cagaattccaggtgagcctgctctaca 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)