BAC Information

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BAC

Clone NameMSMg01-171G21
Chromosome14 (Build37)
Map Location 86,190,991 - 86,191,282
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668603
Downstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171G21.T7 (MSMg01no171_g21.b1)MSMg01-171G21.TJ (MSMg01no171_g21.g1)
ACCAG367677AG367678
length713764
length of high quality
(start - end)
320 (45 - 364)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no171_g21.b1 PHD_FILE: MSMg01no171_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:39 2005CHROMAT_FILE: MSMg01no171_g21.g1 PHD_FILE: MSMg01no171_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATTATTTTCTTTGCCTNTGCTTCCATGTGAAGTTCCTTGATC
CACTTAGATTTGACCTTACCACAAGGAGGAAAGTATGGATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTAAAGCTTTAGGTCTGGCATGTTGATTCCGCCAGAAGTTCTTTTA
TCCTTGAGAAGAT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTCCATTGCTGATGGAGATCTT
CAAATGTTTCCAGAACATGGTTACTGGCCACATGTTGCCTGTTCTTTGTT
CCCACTTATACACAAGGTCCTTTGATTTCATATGCATAAGCATCAAGGAG
ACAGCACACATGCCTAGAACTATGATAAATGCAGAAGACACAAAGCTGAT
AGCAAGCACCTCTTTCTTTTTCAAGACACAAAATCTTGTGGATGAAAAAG
ACACAGGTCAGTTCATGGGATGCTGTGTGTTGAAGCAAAGACCTACATTT
GTTTTCAGTAACTGAGTCTTCTTATATACCCACCCCCCACAATGAAAATG
TCGAATTTCTAAAATCTCTATTTGGCGAAAGATGACAAAATCTGTTTAGT
GAAATCAAATAAACTATTGCCCACAGCTCAAGTTAGATACAAGGAATGCT
ATCACATGACTTGAAAAATAACTGTGGGTCAGAAACAGAAGACCTATCTG
AATAAGAGCTTTTATTAATTATATTGAGGTTTTTTTTTCACAAATATCTT
ATTTTTGATGACCACTCTAGTCTCCTTAAATTGTAGCGCAACTATGTTAA
AAAAAACTCCACATTTATTTTTTTCCCATTGATCGATCCCGAAGCCTATT
AACCCCTTGTCCCTATCGCATGACCACTCCCCTAAAAACTTTAAATATAA
TCCACCCCACCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_g21.g1 MSMg01no171_g21.g1 CHROMAT_FILE:
MSMg01no171_g21.g1 PHD_FILE: MSMg01no171_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:39 2005
         (292 letters)



>mm_chr14_86190791_86191482
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttccattgctgatggagatcttcaaatgtttccagaacatggttactggccacatgtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 492 ccttccattgctgatggagatcttcaaatgtttccagaacatggttactggttacatgtt 433

                                                                       
Query: 61  gcctgttctttgttcccacttatacacaaggtcctttgatttcatatgcataagcatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcctgttctttgttcccacttatacacaaggtcctttgatttcatatgcataagcatcaa 373

                                                                       
Query: 121 ggagacagcacacatgcctagaactatgataaatgcagaagacacaaagctgatagcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggagacagcacacatgcctagaactatgataaatgcagaagacacaaagctgatagcaag 313

                                                                       
Query: 181 cacctctttctttttcaagacacaaaatcttgtggatgaaaaagacacaggtcagttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cacctctttctttttcaagacacaaaatcttgtggatgaaaaagacacaggtcagttcat 253

                                                               
Query: 241 gggatgctgtgtgttgaagcaaagacctacatttgttttcagtaactgagtc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gggatgctgtgtgttgaagcaaagacctacatttgttttcagtaactgagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)