BAC Information

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BAC

Clone NameMSMg01-172G13
Chromosome14 (Build37)
Map Location 105,293,361 - 105,293,514
singlet/doubletsinglet
Overlap genenone
Upstream genePou4f1, 2610206B13Rik, D130009I18Rik
Downstream geneLOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2, LOC620376, LOC100043469, Spry2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172G13.T7 (MSMg01no172_g13.b1)MSMg01-172G13.TJ (MSMg01no172_g13.g1)
ACCAG368329AG368330
length706712
length of high quality
(start - end)
164 (55 - 218)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no172_g13.b1 PHD_FILE: MSMg01no172_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:52 2005CHROMAT_FILE: MSMg01no172_g13.g1 PHD_FILE: MSMg01no172_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTCTGGAAATGTAGAAACTTATTGAATGTTAAATAA
GTGATAATTAGGCAGTTTTCTTTTGCATCATGCAATGGGTATACAATTAA
AATGTTATGTTCAAGCAAAAATTTAATATTAACATCAAATTCTACCAAAA
ATTGCAATAAGTTGCTAAATGTGCACACTGTTGTGGCAATATTACTTGGT
GAAACTCATGTTAAACCTTACCTAAAAAACCCCTTGAAACCGAAGATGTA
TTAAAAAAAGCCTGACTCAAAATAAAATGTTTTTTTTTTTAACCTCCAAA
GGCACCTGAAAAAATGGAAAATTTTATTTAATAATTTTCCCCCCCCCCCC
CCCCCTAATTGATTTTTTTATATATGGTTTTTTTACNACCTGTTTCCCCA
AAATAAAAAAAAAAAAAAACCTTTTTTTGGGGCGGGTAGAACCATCTCCC
CCCCAATCCCCACAAACATTTCACCCTCTCTCTTATAAAAATAGTTCCTC
TCCCCCATTGTCCCACCTCTCTCCCTCTAAAAAAAAATAATAATAACCCC
CTCTCTTCATATCCTTCTCCCCACCTCTACTTAATTAACAACAACCTTTA
TTCAAACAACATCCTCTTTGCTATACTCCATCTTTACTACATTTTATTCC
CTCACT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGCCTGGGAGGAAG
AAGCAGCTCATTATGAGGCCCAAGGGTACCAGCCAGATAAAATGCGAGCT
AATCGGTCAAGGAAAAAGCCAAAAGTGGCTGGCAAAGGCCAGCTTGCTGC
TTGGCCTCTTGGCAGTCGGCTTCAAGGTCATAGTGCACCTCCACCCTATG
CTGAGCCCCCGCCCTGTGTAGTGCATCAGCCCTGCGCAGAGAGGCAATGG
ACAGAGAGGCAATGCACAGACTCGTTCATTCCAAAGGAGGAACAAAGGAA
AATACTTTCATGTTTTTNAGGCATTTCCACGAGCCGAGGGTGGGCGTGTC
CACGCTCCGGTAGCGCATATACAAATAAAAGAGCTTGCCGAGGCGGTCCG
TAACTATGGAGTCAGTGCTAATTTCACTATAGCACAAGTGGAAAGGCTTG
CGAATCACGCTATGACTCCTGGTGATTGGCAGACGGTAGTAAAAGCTGTA
GCCCCCAGTATGGGAATGTATCTTGAGTGGAAAGCCTTGTGGCATGACTC
CTGCCAGACGCAGGCAAGGGCCAATGCCACCATGAAAGGGGATCAGAGAA
CGTGCACTTTTGAATTACTTACAGGTCAGGGACAACACGCTGCTAACCCA
GACAATTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_g13.b1 MSMg01no172_g13.b1 CHROMAT_FILE:
MSMg01no172_g13.b1 PHD_FILE: MSMg01no172_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:52 2005
         (164 letters)



>mm_chr14_105293157_105293714
          Length = 558

 Score =  238 bits (123), Expect = 1e-67
 Identities = 149/161 (92%), Gaps = 8/161 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctggaaat-gtagaaacttattgaatgttaaataagtgataattaggcagtt 63
           |||||||||||||||| |||||||||||||||||||||||||||||   || ||||||||
Sbjct: 205 gaattcttctggaaatggtagaaacttattgaatgttaaataagtg---atcaggcagtt 261

                                                                       
Query: 64  ttcttttgcatcatgcaatgggtatacaattaaaatgttatgttcaagcaaaaatttaat 123
           |||||||||||| ||||||||||    |||||||||||||||||||||||||| ||||||
Sbjct: 262 ttcttttgcatcgtgcaatgggt----aattaaaatgttatgttcaagcaaaattttaat 317

                                                    
Query: 124 attaacatcaaattctaccaaaaattgcaataagttgctaa 164
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 318 attaatatcaaattctaccaaaaattgcaataagttgctaa 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 558
Length adjustment: 8
Effective length of query: 156
Effective length of database: 550
Effective search space:    85800
Effective search space used:    85800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)