BAC Information

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BAC

Clone NameMSMg01-172G20
Chromosome14 (Build37)
Map Location 85,217,991 - 85,218,301
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172G20.T7 (MSMg01no172_g20.b1)MSMg01-172G20.TJ (MSMg01no172_g20.g1)
ACCAG368343AG368344
length732727
length of high quality
(start - end)
315 (39 - 353)287 (68 - 354)
definitionCHROMAT_FILE: MSMg01no172_g20.b1 PHD_FILE: MSMg01no172_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:54 2005CHROMAT_FILE: MSMg01no172_g20.g1 PHD_FILE: MSMg01no172_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TAATTACCAAAACTTATGGAATTATTTCTCATTTTAAAACATTTCTATCC
ATAGTTTGCAACATGTTGATTTATCAAGTTTTCTAAATCAGAGCAATGTA
GTTTTTAGTTCTACAAAGCCAAAATAATATTTAGAATGGGAAAGTGGCAC
TATAGCTAAGAATGCATACTTCTCTTGCAAAAGATCAGAATTTAGTTCCT
AGTACTAATATTAGGTTACTCACAATTACCTGCAATTCTAGCACCAGAGG
ACATGATGATGCTTTTGTATCTATGTGGCCATCCAAACAAACACACACGC
ATGCTTTCTTTTATCCTTGACGNACCCTAAGTTTTAAACTAATAATCTCA
TGTAAAATTACTAATTAGAAATCTATTTCATTATCATCCCCGAAATCAAT
ATAGACATGTGACTTAGTAAGTATTTCATGAAGAAATAATGTGCAACACT
GTAAATTTATACTTAAAAATAGTTTAGTACTTTAAAACAAATATTCATAT
CATAAAATATAATTTGACAATTTGATTTTATGTGTTTGCTTGAAAATAAG
AGGTTCTTACACTAAAGTCTAAACAACAATGAATGANAGATCATTTCTAA
ATTACATAGATTCTGTACACTCATTGAACATGTTGAAAATTTACTGTTTC
ATCTTATCATCAGAACTTTAGTATTTTGTTTT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTACAGGTAGACAACATAGTTAGAGATGGACCCT
GCTTCTGCTGGTAAGGCTCCCACATGAAGATTAAGCTGCACATCTGTCAC
ATATGTGCAAAGGGCCTGGGTTCATCCCATGCATGCTCTCTGGTTGGTGG
TTTAGTCTCTGTGAACCTTTATGGGCTGAGGTTAGTTGACTATGTAGGTT
TTCTCTTGCTGTCCTTGATCTCTCTGGCTCCTTAAATCCTTTCACTCTCC
CTTCCACAGGATTCCTCTAGGCATGCTTAATGTTTAGGTGTGTGCCTTGA
TTNCNGTTCCCCCNAGACAANGCCCGAAGCCTCTCAGAGTACAGTTATGA
TAGGATCTATCTGCAAAAAAAAAAAAGAGCATTAATAGTGTGAGGAATGT
TCTCTTTCTCATCACAAGGGTCTCAAGGTAGGCCAGGCATTGGTTAGCCA
TTTCCTTCAACGTTATTCCTGCATATCTTATAGGGAAAAAAATTGTGTGT
TGAACGTTTTGAGCCTTGAGTTGTTATCCTCAACCTTCCACTGGAAGTCT
TCCCTAGTAACAGGAGGCGTTCCTGTATTTTAGTTTCCATATCCACCATT
GCTAGGAGTCTTACCTGGTCTAACCCTGATAGATTCCATGGAGTTTCCTT
TTTCTAATTTTAGCTCATCCCAGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_g20.b1 MSMg01no172_g20.b1 CHROMAT_FILE:
MSMg01no172_g20.b1 PHD_FILE: MSMg01no172_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:54 2005
         (315 letters)



>mm_chr14_85217787_85218501
          Length = 715

 Score =  547 bits (283), Expect = e-160
 Identities = 304/311 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctataattaccaaaacttatggaattatttctcattttaaaacatttctatccat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataattaccaaaacttatggaattatttctcattttaaaacatttctatccat 264

                                                                       
Query: 65  agtttgcaacatgttgatttatcaagttttctaaatcagagcaatgtagtttttagttct 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 agtttgcaacatgttgatttatcaagttttctaaatcagagccatgtagtttttagttct 324

                                                                       
Query: 125 acaaagccaaaataatatttagaatgggaaagtggcactatagctaagaatgcatacttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 acaaagccaaaataatatttagaatgggaaagtggcactatagctaagaatgcatacttt 384

                                                                       
Query: 185 tcttgcaaaagatcagaatttagttcctagtactaatattaggttactcacaattacctg 244
           |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 tcttgcaaaagatcagaattcagttcctagtactaatatcaggttactcacaattacctg 444

                                                                       
Query: 245 caattctagcaccagaggacatgatgatgcttttgtatctatgtggccatccaaacaaac 304
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 445 caattctagcaccagaggacatgatgatgcttttggatctatgtggccattcaaacaaac 504

                      
Query: 305 acacacgcatg 315
           |||||| ||||
Sbjct: 505 acacacacatg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)