BAC Information

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BAC

Clone NameMSMg01-173N20
Chromosome14 (Build37)
Map Location 89,483,152 - 89,483,461
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173N20.T7 (MSMg01no173_n20.b1)MSMg01-173N20.TJ (MSMg01no173_n20.g1)
ACCAG369345AG369346
length747748
length of high quality
(start - end)
314 (46 - 359)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no173_n20.b1 PHD_FILE: MSMg01no173_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:37 2005CHROMAT_FILE: MSMg01no173_n20.g1 PHD_FILE: MSMg01no173_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACAGAGGAATCTCAAATGACCTAGAAGCAGTCGAAGAAATGT
TCAACATCCTTAGTCATCAGAAAAATACAAATCAAAACAACCCTGAACTG
CCACCACACACCAGTGAAAATGGCTAAGATCAAAAACTCAAGTAACAGTG
TGAGAAGAATGTTTGTTTGTCATTCTATCTTACTTCCTTTAAAAATCTAA
CTTTGTCTTGTTTTAGTGTTCATTTCTTTATTTATTCACATTACAAATGT
TGCCTTCCCCACCCCCACCTCCCCTACACACACTGTTTTCCACACACACA
GGCTGCTTCTCTCCTGCTGGTCCNAATCGAACACCGGAATAACTACTCTG
GAAATCAATCTGGCAGTTCCTCAGACAAAAAAAAATAGTTTTGCCTGAAG
ACCCAGCTATCCAACTCCTGAGCATACACCTAAAGAATTATCCACTACAC
CACAAGGACACATGCTCCACTATGTCATAGCAGGCATTTCATGGTCAGAG
ACTGGAAACAACCTAAATGTACATAAACAGAAGAATGGATAGAGAAAATG
TAGTTCATTTACACAATGGAATACTATTCAGCTATTAAAAATGAGGACAT
CATGAATTTTGCAGGCAAATGGATGGAACTAGAAAATATCACCCTGAGTG
AGGCAATCCAAACTCCAAAGGAAACGCATGGTATGTACTCACTGGCN
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCAGCTCTGAAAAAATTAAA
ATTAAAATTAAAATTAAAAATTAAAATTAAAAAATGGGGCTATTTGATTT
TCTGGAGTCCACCTTCTTGAGTTCTTTATGTATATTGGATATTAGTCCCC
TATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTAT
GAGGTCCCATTTATTGATTCTCGATCTTAAAGCACAAGCCATTGCTGTTC
TATTCAGGTATTTTTTCCTTGCCNAAACATNTCCGCAGGTTTTCCCCTAT
TTTCTCCTCTATACGTTTCAGTGTCTCAGAAAAAATATGGAGTTCCTTAA
TCCACTTAGATTTGACCTTAGGAAAAGGAGATAGAAATGGATCAATTCCC
ATTCTTCTACATGATAACCGCCAGTTGTGTCAGCAACATTTTTTGAAAAT
GCTGTCTTTTTTTCCACTGGATGGTTTTAGCTCCCTGTCAAAGATCAAGT
GACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTATTCCATTGG
TTTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACCATTGT
TCTGTAGTATAACTTTAGGTCAGGCATGGTGATTCCTCCAGAGGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_n20.b1 MSMg01no173_n20.b1 CHROMAT_FILE:
MSMg01no173_n20.b1 PHD_FILE: MSMg01no173_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:37 2005
         (314 letters)



>mm_chr14_89482785_89483498
          Length = 714

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaacagaggaatctcaaatgacctagaagcagtcgaagaaatgttcaacatcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaattctcaacagaggaatctcaaatgacctagaagcagtcgaagaaatgttcaacatcc 618

                                                                       
Query: 65  ttagtcatcagaaaaatacaaatcaaaacaaccctgaactgccaccacacaccagtgaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttagtcatcagaaaaatacaaatcaaaacaaccctgaactgccaccacacaccagtgaaa 558

                                                                       
Query: 125 atggctaagatcaaaaactcaagtaacagtgtgagaagaatgtttgtttgtcattctatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atggctaagatcaaaaactcaagtaacagtgtgagaagaatgtttgtttgtcattctatc 498

                                                                       
Query: 185 ttacttcctttaaaaatctaactttgtcttgttttagtgttcatttctttatttattcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttacttcctttaaaaatctaactttgtcttgttttagtgttcatttctttatttattcac 438

                                                                       
Query: 245 attacaaatgttgccttccccacccccacctcccctacacacactgttttccacacacac 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 437 attacaaatgttgccttccccaccctcacctcccctacacacactgttttccacacacac 378

                     
Query: 305 aggctgcttc 314
           ||||||||||
Sbjct: 377 aggctgcttc 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)