BAC Information

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BAC

Clone NameMSMg01-174A02
Chromosome14 (Build37)
Map Location 19,021,859 - 19,022,182
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608
Downstream geneNr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174A02.T7 (MSMg01no174_a02.b1)MSMg01-174A02.TJ (MSMg01no174_a02.g1)
ACCAG369438AG369439
length733787
length of high quality
(start - end)
328 (46 - 373)72 (75 - 146)
definitionCHROMAT_FILE: MSMg01no174_a02.b1 PHD_FILE: MSMg01no174_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:46 2005CHROMAT_FILE: MSMg01no174_a02.g1 PHD_FILE: MSMg01no174_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAAGCCTCCTCTTTCTCTTATCTACACTGTAATAATGTTTGTAT
GAAGGCTATCAGCAAGTAACCAAAGGTCTACCTCATGCCCTCCATAGATG
ACAGTGATGGTACAGGTGAGGAATTCATGGTACCATCTGAACATTTAACC
AATGGAATAAGATTAAGACTCTCAAAAAACAGTTTCGATGGAATAGTTAA
ATTTACTTCTAAGGCTCTGATTCCGGGACTCAGTGGAGATCATCAATTTC
TCTAAGGAGGGTCCACTCAGGAGCAAACAGGATGAAGAAGCAGCAGAGCA
TCTGGGACAGGGTCTATTGGGACTACATCTACACTGAGTAGGTGGGGCTG
CTCTGCAACCCTTTGTGCACTGGTTTTGCCAGGAGAGAGCTGGTCTCCCA
GGAGTGCTAACACAGGCTTACAGATTCGCAGGAGGAATAAGCACCAGCCA
GAGACAGGAAGAACATCTAACAACAGAGAATACCAGATGGCAAAAGGCAA
ATGCAAGAATCTTACCAACAGAAACCAAAAAACTATTTGGCATCATCAGA
ACCCATAACTCTAACCACAGCAAGCCCCGGATACCCCCAATACAACAGAA
AAGCAAGATTCAGATTTAAGATCATATCTCATGATGCTGGTACAAGATTT
GAAGGACATTAATAACACCCTTAAAGAAATACG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAACAGCTAGAGATACAATGAGAA
ACTGTCCCAAAGTGGGGTTGGGGGGGTGCGGGTCATTTGCTTTGTTTAGA
AAAGAAACAGTTCTTTCTGCTGACAGGATGCTCATATGATATCCTATGAG
AAGACTTATCACTGATTCTATACACAATTTGAAGACAACTTTTACTAGAT
GTAGGTTTCCTTATATACCGATTGCAATTCAGCGTGTTATTACTCTTATG
AACACTTACACATATGTAATTTCATATGCACTTTTTACCCCATCTCTGAT
TCCGACATTGTTGAATTTCCTTTTTTTTTTCCTCCCTCCTCTTTACCTTT
TTATTTATCACTGTTTTTTTGCTTTCTTCCCCCCTCTCCTTTTTACAATA
TATACCCCTTTCCCCCCGGCTTTTTTTTTTTTTTCAACCCTTTTCCTCGC
CTTTTTCCATAATTTCTTTCTTTTTTTTTCCGTCAGCCTTTATTCCCCCT
TTATAACTTTGATATGTCCCTATTTAACCCCCCCTCTTTTTTTTCGCCTC
CACCCTATATATTACATACATATATATTTTAAGCCTTATTCCTTTCACCT
TTGTACCACCTTTTATTTTTCCCCTTGTTTTATTTCCCCCCTTTTTTCTT
TTTATCCGCCCTCTTTCCTTTTTCACCCCTTTATTTCACACATTTTTACG
TGCACCGACATAAATAATCCCCCTATTACCCCCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_a02.b1 MSMg01no174_a02.b1 CHROMAT_FILE:
MSMg01no174_a02.b1 PHD_FILE: MSMg01no174_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:46 2005
         (328 letters)



>mm_chr14_19021655_19022382
          Length = 728

 Score =  580 bits (300), Expect = e-170
 Identities = 318/324 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgaagcctcctctttctcttatctacactgtaataatgtttgtatgaaggctat 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattctgaagcctcctctttctcttatctacactgtaataatgtttgtaggaaggctat 264

                                                                       
Query: 65  cagcaagtaaccaaaggtctacctcatgccctccatagatgacagtgatggtacaggtga 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagcaagtaaccaaaggtatacctcatgccctccatagatgacagtgatggtacaggtga 324

                                                                       
Query: 125 ggaattcatggtaccatctgaacatttaaccaatggaataagattaagactctcaaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaattcatggtaccatctgaacatttaaccaatggaataagattaagactctcaaaaaa 384

                                                                       
Query: 185 cagtttcgatggaatagttaaatttacttctaaggctctgattccgggactcagtggaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtttcgatggaatagttaaatttacttctaaggctctgattccgggactcagtggaga 444

                                                                       
Query: 245 tcatcaatttctctaaggagggtccactcaggagcaaacaggatgaagaagcagcagagc 304
           |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatcattttctctaaggagggtcaactcaggagcaaacaggatgaagaagcagcagagc 504

                                   
Query: 305 atctgggacagggtctattgggac 328
           | ||||||||||||| ||||||||
Sbjct: 505 agctgggacagggtccattgggac 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)