BAC Information

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BAC

Clone NameMSMg01-175A20
Chromosome14 (Build37)
Map Location 32,180,258 - 32,180,906
singlet/doubletsinglet
Overlap geneCapn7
Upstream geneCacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1
Downstream geneSh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175A20.T7 (MSMg01no175_a20.b1)MSMg01-175A20.TJ (MSMg01no175_a20.g1)
ACCAG370164AG370165
length719722
length of high quality
(start - end)		613 (46 - 658)648 (72 - 719)
definitionCHROMAT_FILE: MSMg01no175_a20.b1 PHD_FILE: MSMg01no175_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:03 2005CHROMAT_FILE: MSMg01no175_a20.g1 PHD_FILE: MSMg01no175_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTATAGGCTCATCATTAAGACTTAAGAAGTCATCTATTTGTCTAT
ATAGCATCACTACAAGGCAGTACATCTTTGTAGATCTGCAGAGATCTGCT
CCAAAGAGGTGGGCTAATGCCTAGTTATTGTTATATATGTTTAATATTAA
CAGGAAAAGCATATTAATAGCAGGAATCTTTCCTAAAATGAATTATCTTA
TGGCCTTGTCCAATAAGAGTGAATCTGTTACAGATTGTATTATAATATGA
AGCAGACCATCTCAGGAAGATCACTTGCTAGTTATTAGCTTGTCCTATTA
AGGCTCTTGACAGTCCATTGCCAGGGGAGTAGTCAAGATCAGTCAAGTGC
TCAGGGATTGGCGGCTTTCTGTGGCAAGCTCGGGAATTGGTGGGTGTGGT
GGTCTGAATGTGCTTGAGCCCATGGAAAATGGATCTATTAGGAGGTGTGG
CCTTACTGGAGGATGTGTAGCCTTGTTAGAGGAAGTGAATCACTGTGGAG
TCAGGCTTTGAGTTCTCATATATATGTTCAAGTCTGGCCAGTGATCCAGA
CCCCACTCCTGGCACCAACTTCTGTTATAGGGTTTTAGTGCTATGAAGAG
ACACCATGACCAAAGCAACTTTTTTTTTACATGTATTTATTGTTATATGT
AAGTACCCTGTAGCTGTCC

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGCTGTCAGACTTGGCAGCAGACAACCT
TTATCTACTGAGCCATCTCACCAGCCCATGGGCTAAGTTTTCAATTTGTG
TCTCCTGTTTATTCTTTCATTAATGGAGAGCAAAACTACCTAGTGTGATG
AAAATAAAACTGTACCCTAGAAGTATCCTGAAAAAAATTCACAGAAAAGA
GGGCAGCACTGTTCAATTAAGAAAACATAAGAAAAAATAAACTTAAGTTT
TAAAAGTAAAAGTAGTAGTAAATGTATTTCAAAGTATAAAACCATGTAAA
ATTTTTACTCTAGGAAAATATTTGTGTGGTTTTTTTTTTGTTTTTTTTTT
AGTTATATAACGATCAACATTTGAAAATAGCTAGCTTGGCTTGGTATGGC
CCACTGGACTTCATGTGTCATGTGTCTGCAGAAGTGAGAGAGACTGACTG
GTGAGGCTCAGTGCCTGTGCTGACCAGTGTAATGGTGAAGAATGCATCTT
TTCCTTTATGACCAATCCTCTCCAGCCCTACCTTCCTGACAACCTTTTCT
CAACAATCAAGGTCAACAATGATTACACGATGCTAAGTCCAATGGCATCT
TCTCTGACCCCTTGGAGAGCAGGAGATAGAGGTGGGCTCTTTTCCTCTCC
TTTGCTAAGATTCTATCAAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_a20.g1 MSMg01no175_a20.g1 CHROMAT_FILE:
MSMg01no175_a20.g1 PHD_FILE: MSMg01no175_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:03 2005
         (648 letters)



>mm_chr14_32180115_32181163
          Length = 1049

 Score = 1201 bits (621), Expect = 0.0
 Identities = 642/649 (98%), Gaps = 1/649 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctgtcagacttggcagcagacaacctttatctactgagccatctcaccagcccatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aggctgtcagacttggcagcagacaacctttatctactgagccatctcaccagcccatgg 733

                                                                       
Query: 61  gctaagttttcaatttgtgtctcctgtttattctttcattaatggagagcaaaactacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gctaagttttcaatttgtgtctcctgtttattctttcattaatggagagcaaaactacct 673

                                                                       
Query: 121 agtgtgatgaaaataaaactgtaccctagaagtatcctgaaaaaaattcacagaaaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agtgtgatgaaaataaaactgtaccctagaagtatcctgaaaaaaattcacagaaaagag 613

                                                                       
Query: 181 ggcagcactgttcaattaagaaaacataagaaaaaataaacttaagttttaaaagtaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggcagcactgttcaattaagaaaacataagaaaaaataaacttaagttttaaaagtaaaa 553

                                                                       
Query: 241 gtagtagtaaatgtatttcaaagtataaaaccatgtaaaatttttactctaggaaaatat 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 552 gtagtagtaaatgtatttcaaagtataaaaccatgtaaaattttcactctaggaaaatat 493

                                                                       
Query: 301 ttgtgtggtttttttt-ttgttttttttttagttatataacgatcaacatttgaaaatag 359
           |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 492 ttgtgtggttttttttgtttttttttttttagttatataatgatcaacatttgaaaatag 433

                                                                       
Query: 360 ctagcttggcttggtatggcccactggacttcatgtgtcatgtgtctgcagaagtgagag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctagcttggcttggtatggcccactggacttcatgtgtcatgtgtctgcagaagtgagag 373

                                                                       
Query: 420 agactgactggtgaggctcagtgcctgtgctgaccagtgtaatggtgaagaatgcatctt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agactgactggtgaggctcagtgcctgtgctgaccagtgtaatggtgaagaatgcatctt 313

                                                                       
Query: 480 ttcctttatgaccaatcctctccagccctaccttcctgacaaccttttctcaacaatcaa 539
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 312 ttcctttatgaccaatcctctccagtcctaccttcctgacaaccttttctcaacaatcaa 253

                                                                       
Query: 540 ggtcaacaatgattacacgatgctaagtccaatggcatcttctctgaccccttggagagc 599
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 252 ggtcaacaatgattacacgatgctaagtccaacggcatcttctctgaccccttggagagc 193

                                                            
Query: 600 aggagatagaggtgggctcttttcctctcctttgctaagattctatcaa 648
           |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 192 aggagatagaggtgtgctcttttcctctcctttgctaagattctatcaa 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space:   662882
Effective search space used:   662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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