BAC Information

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BAC

Clone NameMSMg01-175J08
Chromosome14 (Build37)
Map Location 29,452,553 - 29,452,834
singlet/doubletsinglet
Overlap genenone
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218
Downstream geneCacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175J08.T7 (MSMg01no175_j08.b1)MSMg01-175J08.TJ (MSMg01no175_j08.g1)
ACCAG370526AG370527
length768718
length of high quality
(start - end)
310 (105 - 414)284 (90 - 373)
definitionCHROMAT_FILE: MSMg01no175_j08.b1 PHD_FILE: MSMg01no175_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:41 2005CHROMAT_FILE: MSMg01no175_j08.g1 PHD_FILE: MSMg01no175_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNTTTCTTTCCNCTTTNCCACTCCAAATTACANNNCCCCACCGGCC
CNNNGCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAACATTCAGTTTTTGAAAAAAATATAGCATTTTAAA
TGATTCTTTAATAATTTCATACAATATATTGTTATCCTTTCCTCCCTCCC
TTAATCCCTCCTAAGTCTATCTGAACCTCCCTAACTTTCCAAAACTTCAT
GTCCTCCCTTTTTGTTTGTAACAACCCCTTGGTTACAATTTTTACTTCTT
ATAACTCATAGGTATGGAGCCATACAATGGAGCATGGTCAACCTACCAGA
TTCCACATTCTTAAAGGAGAGAAATGGTTGTCCCTGCAGGAGCCTCATCT
GGAAGTAGGATCTATAAAATTATATGGCTCCCCCTTATGCAGGCAACCCC
AGTTGNTGTGACTTCACAGGCATAACAAAAAAGAAAAAGACCTGCAGACA
TTGTTTAACTCAAGTCCTTCCCATCTCTGGCTCTTAGAGTCTTTCTGCTC
CTTCTTCCATGATGGTCCCCCAGCCTTAGAGAAGGGATGATATAAATACT
CCACTGAGGCATTTTCTCTGTGCTTTGACTAGTGGTGGGTTTCTGGGCTA
ACCTCTATCTGCTACACAAAGAACCATTCATGGTTATATTGGACTTCTTT
TCCACCAATGACCCTAAAGGAAAAAAAGCATACATCTGGCCCAAAAATTT
TTTTAAAATGATGCGTTT
NNNNNNNNNCCCACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGCAAGGT
ATAGTGACCACCTCTTGGCCAGCTTAAGAGTCCCATGGACTCAAATGAAG
CCAGTTGGTGTCATTTCAGTTGGCTCGACAGGATAGAAGCCTCGGTGTTT
CTCAGAATTTGGACCTGCTGCTATAAAGCACAAAGTGAGAAATCCCTCAT
TGACTATCTAGTTCCACATGAATGTTTAGTGGGGCGGCTGTAAAGTCTAT
GCTGGGAAGATGCAGGGGAGATTGGCCTAGGTGACATCTTCTTTTCATAC
TTTCAAATTTCAACTTAAACTTTAGTTCCNTTGACCGAGTCTTGCCCGGA
GTCATTATAAAACACAACATGTGGTTCATGTGGCCGAATTCAAAAGACAT
TTCCATATACTAGTAAATGTGCTCTTTTTTTATTATTATTTGGGGCTGCA
AAGATGTTCAGTAGATAAGGGCACTTGCTATATGAGCATGAGAACCTGAG
TTCAAGTCATGAGCTCCTATATAAAAGCTGGATTTGGCCACATGCACATC
TAACTACTATTGTTGGGGCTGGGGAAGCAGTATAGAATAGGCTCTCTTCA
GGTCTCCATTTGTATACATTACACACACACACACACACTCACCCACTAGA
TGTTCAGATTTCCTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_j08.g1 MSMg01no175_j08.g1 CHROMAT_FILE:
MSMg01no175_j08.g1 PHD_FILE: MSMg01no175_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:41 2005
         (284 letters)



>mm_chr14_29452353_29453036
          Length = 684

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgcaaggtatagtgaccacctcttggccagcttaagagtcccatggactcaaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattgcaaggtatagtgaccacctcttggccagcttaagagtcccatggactcaaatgaa 260

                                                                       
Query: 61  gccagttggtgtcatttcagttggctcgacaggatagaagcctcggtgtttctcagaatt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gccagttggtgtcatttcagttggctcgacaggatagaagcctgggtgtttctcagaatt 320

                                                                       
Query: 121 tggacctgctgctataaagcacaaagtgagaaatccctcattgactatctagttccacat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggacctgttgctataaagcacaaagtgagaaatccctcattgactatctagttccacat 380

                                                                       
Query: 181 gaatgtttagtggggcggctgtaaagtctatgctgggaagatgcaggggagattggccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatgtttagtggggcggctgtaaagtctatgctgggaagatgcaggggagattggccta 440

                                                     
Query: 241 ggtgacatcttcttttcatactttcaaatttcaacttaaact 282
           ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgacaccttcttttcatactttcaaatttcaacttaaact 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)