BAC Information

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BAC

Clone NameMSMg01-175M11
Chromosome14 (Build37)
Map Location 84,433,786 - 84,434,097
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
Downstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175M11.T7 (MSMg01no175_m11.b1)MSMg01-175M11.TJ (MSMg01no175_m11.g1)
ACCAG370670AG370671
length737739
length of high quality
(start - end)		319 (43 - 361)78 (144 - 221)
definitionCHROMAT_FILE: MSMg01no175_m11.b1 PHD_FILE: MSMg01no175_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:56 2005CHROMAT_FILE: MSMg01no175_m11.g1 PHD_FILE: MSMg01no175_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAAACTATAAGACTTAGTTAACTATTATAATACCATCACTGCTTTCC
AGAAATCTTAAACTATTCATGACTTTAATCACTTTGACATTGATTTGCAT
CTATTGAGCTTTTGAAGCCTGATAATAAAATCATGCCTTAATGCTTTTAT
TCTTTCAACCACAGCATATACAAGTTGCTTTCAAAATGCTACTTACTTAA
ATTATTTGGAGAGCTACATGCTGAAATTAGAATCTATTTAGATTATATAA
ATTAAACATAAAAAAATATTTAGAGTAGATATTCTCTGTTCATAAGTAAA
AGTAGCATGATTTTTAATTCCCCCCGCCACTGTTATGAGAAGATTATTAT
AAACCTCATTATTTTTCAAGGATATGATATATTGAGTGTATATATATGAT
ATACAATATGTAATATGTATATTATGATATCTTCATTGCTTTATAGAAAA
TTAACCCGTTCATGACTTGAGTCACCTCGATGACTATTTGTTATATATAT
TACATATATATAAAATGTATAATATAACACATGCACCTTAGTCTGTATCA
ATGTGCTGTATTTGTTTTAGAGGTGGTTTCATTACCTATTTTAAAAATAT
AATAAATTATGGACACAATTTTATAAGCAGAATTTTTAAATCCATTAACA
TTTATTGTGCTGTTTTGAGATAGTTATTCAATTCCTN

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNGAGCCGCAGGNNGAA
CNANAGAAGTTTACGNGGAGGGGAGCNNNANNNNNNCAGAGNNGGCCAAN
NNAAAAGAANNNAACCACCACCCACCNNCNANCCNCNNAGNNNAAAAAAA
GGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAACACGGACACAGGACCCCAAGGGGAAAAAAACGA
TTGTGTAAATAAGGTGTAGCCTGGATACACATTTCTTCAATGACAAAATT
GTCAGAAATTCTGCTTTTTTTTTTATGNCAAGACACAANGGAAGCCCANA
NACAACCACCCACAGGCCCCCACGACGCNGCAGGAGAAAGAAGCAGGAGN
NACACAAACCNCNCCGGCCACGAAGGGCCGAACAGGGGACAAGCACGACA
CGGAAAAAANANACCGAGCAANAACCCAGAACCACACCACAAGCGACAAA
ANGGGGCAAGGAGCGACACAACAACCAACAGACGCGCCACACNACACGCA
CAGCAACCAACCNAAAACGCCCAACNAACCACAGGAAAACNNCAAAGAGG
CGGACAAAGGGCACAGAGGCCAACCGGGCACAGGAAAACGACCAACAAGN
ACCGTAGTTTTCCCGCCAACCCCCGCACACCAGCACAGACCACCCCCCTA
AAAAAAAACCCAGAACGACCACAATAGGGGAGATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_m11.b1 MSMg01no175_m11.b1 CHROMAT_FILE:
MSMg01no175_m11.b1 PHD_FILE: MSMg01no175_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:56 2005
         (319 letters)



>mm_chr14_84433581_84434299
          Length = 719

 Score =  536 bits (277), Expect = e-157
 Identities = 304/313 (97%), Gaps = 1/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctcaaactataagacttagttaactattataataccatcactgctttccagaaatc 65
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 206 aattctcaaactataagacttagttaactattataataccgtcactgctttccagaaatc 265

                                                                       
Query: 66  ttaaactattcatgactttaatcactttgacattgatttgcatctattgagcttttgaag 125
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttaaactattcatgattttaatcactttgacattgatttgcatctattgagcttttgaag 325

                                                                       
Query: 126 cctgataataaaatcatgccttaatgcttttattctttcaaccacagcatatacaagttg 185
           ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 326 cctaataataaaatcatgccttgatgcttttattctttcaaccacagcatatacaagttg 385

                                                                       
Query: 186 ctttcaaaatgctacttacttaaattatttggagagctacatgctgaaattagaatctat 245
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 386 ctttcaaaatgctacttacttaaattatttggagagttacatgctgaaattagaatttat 445

                                                                       
Query: 246 ttagattatataaattaaacataaaaaaatatttagagtagatattctctgttcataagt 305
           ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 446 ttagattatataaatcaaacataaaaaa-tatttagagtagacattctctgttcataagt 504

                        
Query: 306 aaaagtagcatga 318
           |||||||||||||
Sbjct: 505 aaaagtagcatga 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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