BAC Information

Click to search

BAC

Clone NameMSMg01-175M22
Chromosome14 (Build37)
Map Location 24,557,871 - 24,558,180
singlet/doubletsinglet
Overlap geneKcnma1
Upstream gene1700112E06Rik, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175M22.T7 (MSMg01no175_m22.b1)MSMg01-175M22.TJ (MSMg01no175_m22.g1)
ACCAG370690AG370691
length770719
length of high quality
(start - end)
314 (46 - 359)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no175_m22.b1 PHD_FILE: MSMg01no175_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:58 2005CHROMAT_FILE: MSMg01no175_m22.g1 PHD_FILE: MSMg01no175_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGTTTTGCTTTCCTTCCTGAGGCTCTTCTGGATTGTTTGCCATC
CCTTACAGACATTTTGTTGCCCCTCTTACTGATGTGCCCAGAGCAACAAG
GATGCACTCCAGTAGGAAAAGAACCCCCAACCTCGGTAGTCATTACAACG
AAGCTCTATTTCCTGCTCTTGCTTCACACACTGCTCAGGATATATGGGAA
CTAGGGCATCTGGACTCTACATTTCCTGTCTCTAAAGCCTTCATTTTAAC
ATGTGTCTCCATTACCACTGAAGTAGGGGAAGAAAGCATGAAGAATGGTT
CACAGCTAAAGTGTGACACATGCCACATCTGTTTGAATTGCCAACCTGGA
ACAACCTAAAGTAACACGGGAAGAAGGGAACCTCAACTGAAAAAAAAATG
TCCAACAATGGGTCGGCCAAGGCCAATCTATATAAAAATTTTTTTTTATG
AAATAAGGGAAGGGTGCTTTTCTTTTCTGGGTGTCCCCCCACCCTAAACA
CTTANGTCCCCATTCCCTTTAAAACGCTTTAATCAAAAGCCCGGTTGGCT
TTTTAATAAAACACCCCAAGCCTAAGCGTTTTCCCCTTGGAAATTCTGGG
GANNANNNNNNNCTCCTTGTAATCTGCCGCCCCCTCTCTCTNCNTNCNNN
NCGCGNNNNCNGTNNNNNNNATCTCTCTTTTTTCACAACTTTACAAGCCC
ACATTCTTGGGGCTAGGATT
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCCCTCTCAAAAAATTCACCCAAAGGGTGTGGCCCTATGTTTTGGTC
CCTTCAAGCATCTACATCAAAATACCTTTGACTGGATAATTGATAACAAC
ATAGATGTATTGCTCACAAATCTGGAGGGTGAAGTGTCCTTGGGTCAAGG
TACCAACATATGCAGTAATACTATTCTGGGTGCCCCATTGTCATGACCTA
ATTACCATCTAGATGCTACTCCTTCTAACGATGCAGGTTTAGGGTGAAGC
TTCTATTTGTGATTTTGCCCCACACCCCCATTTAGATCAAAAGAGCACAC
ATCTCTAATGCCATTGCAAATCAAACACAACAGTAATGACATTAACTATT
TTTTTTATTAAGAATCTGGAAATGTATTTAAAACGGACCTTCTTACTCTA
CAAGGCCAACTGCAAAGAGAAGAATCTCTGAAAAGCCAGCTTAGTCATAG
AACTAGAATTAATTTAGGCTTTAAATAGTGACTGAGTTTTCTATTTTTCT
TCCTCATTTTTTCTCAACTGGGACCATGTGGAACACTCTGTTAGAAGGTC
CCTCTGGTTTTGTCAGGTCACTGGAACAAGGGAAGGCTGCATCTCACAGT
CAGTTTGGTTGGATGGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_m22.b1 MSMg01no175_m22.b1 CHROMAT_FILE:
MSMg01no175_m22.b1 PHD_FILE: MSMg01no175_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:58 2005
         (314 letters)



>mm_chr14_24557667_24558380
          Length = 714

 Score =  545 bits (282), Expect = e-159
 Identities = 303/310 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgttttgctttccttcctgaggctcttctggattgtttgccatcccttacaga 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcttgtttggttttccttcctgaggctcttctggattgtttgccatcccttacaga 455

                                                                       
Query: 65  cattttgttgcccctcttactgatgtgcccagagcaacaaggatgcactccagtaggaaa 124
           ||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cattttgctgcagctcttactgatgtgcccagagcaacaaggatgcactccagtaggaaa 395

                                                                       
Query: 125 agaacccccaacctcggtagtcattacaacgaagctctatttcctgctcttgcttcacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agaacccccaacctcggtagtcattacaacgaagctctatttcctgctcttgcttcacac 335

                                                                       
Query: 185 actgctcaggatatatgggaactagggcatctggactctacatttcctgtctctaaagcc 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 334 actgctcaggatatatgggaactagggcatctggactctacatttcctatctctaaagcc 275

                                                                       
Query: 245 ttcattttaacatgtgtctccattaccactgaagtaggggaagaaagcatgaagaatggt 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 274 ttcattttaacatgtgtctccattaccgctgaagtaggggaagaaagcatgaagaatggt 215

                     
Query: 305 tcacagctaa 314
           ||||||||||
Sbjct: 214 tcacagctaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)