BAC Information

Click to search

BAC

Clone NameMSMg01-175O22
Chromosome14 (Build37)
Map Location 54,614,345 - 54,756,659
singlet/doubletdoublet
Overlap geneA630038E17Rik
Upstream geneEG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneEG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175O22.T7 (MSMg01no175_o22.b1)MSMg01-175O22.TJ (MSMg01no175_o22.g1)
ACCAG370778AG370779
length718721
length of high quality
(start - end)
314 (47 - 360)286 (436 - 721)
definitionCHROMAT_FILE: MSMg01no175_o22.b1 PHD_FILE: MSMg01no175_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:07 2005CHROMAT_FILE: MSMg01no175_o22.g1 PHD_FILE: MSMg01no175_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,756,349 - 54,756,659)(54,614,345 - 54,614,630)
sequence
CCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCATCTTCACATCTGTCTCACTCTAACTCTGAGATGCAAGTGA
ATCTACTAGTAATAATTTGTAATACAAAATGGATGGTAGCTCTAGTTCCA
GGATTCAAATTATCCATAGAAATATAGAAAAAAAAAAACAACTTACGGGG
CTCCACAAAGAGCTCTATGCCAGTTCCAAAAAACATCTGTCGGGTGTCCC
AGGAGCACGTTATAATCTTGCTTTGCAGATAACCAGTCTGGGACCAGCCC
TGGGCCTGGGTTTCAACATCTGTGTCTTGCCTTTTAGGCTGCAACTCAGC
CTATAGAGGCTATTATTCACACCCCCCCCCCGTTGTCCTTGATGATTCAG
GAGGCCAAGCACACAGCACGCCCTTTTCATTTGAAGCTGATAGCTGAATG
TTTGGATAGGAAAGTGAGCACAGAGTCTCCATCTAAGAGATGAGGGAACA
GGGCTGAAGCAAAGCAAGAGAGGGTGACAGAGAGCTGACTTCAAGATGCA
AGATTTAACTCCCAATTTATTTGAGAAGGCTGTCAAGAAAAACACAGTAG
CTGGATACAGAGATAGAATATTAAATTTCTTACTGACTGAAAGGCAAGGC
GAGGAGACCTTAGAAACATCGTCTTGAGACAGCCGGCCACCTTCCTGGTG
AGAGCACGGGGGTCTGCN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTTATCCTCAGCTATACAGCA
AGTTTGAGGTCAGCCTTAAGTACCTGAGGCCCTACCTCAGAAACATCAAA
ACCAAATAAACACACGAATAAAAGCCAAAGTAATGGATGAAGAAAATATG
GTACAAACCCAATAAAATTTTATTCAGCCATAAAGAAGAATAAAAGCATG
CTATCCACAGGGAAATGAGTATAACTGGAGATCATTAAGTTATGCAAGTT
AAGGCAGACTTAGAAAGATAAATCTTATATTTTCTCATATTTGTGGATCA
CACACACACATTTACTCNTTCATCAGCCGTNGCCCTGTCTAAAGAAGGGA
AGGGGAGAGAGAGGGGGATGCCCAGACAAAATGCCAGACATAAAAGTATA
ATATATAGTACAGGACATGTAAGTGTATACAGTGCATAATACTCACTGAC
AATAACTATATTTCCAACATACATTAACTATTCTCTTTAGCTGCATTTTA
GAACTCCTTATAAAATTATAGTTGAAATTTAAAACCAAAAATAAATGTGA
AAATATAAAATGACTATTAGAGTATAAAAGAGAGAATAGAGAAAAGTTGT
GGGTGATGGGGGGTAAGTACAATAAAAGTAATATGTATGTATGAACATTT
TATAATGAAGTGCATGGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_o22.b1 MSMg01no175_o22.b1 CHROMAT_FILE:
MSMg01no175_o22.b1 PHD_FILE: MSMg01no175_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:07 2005
         (314 letters)



>mm_chr14_54756146_54756859
          Length = 714

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagcatcttcacatctgtctcactctaactctgagatgcaagtgaatctactag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattcagcatcttcacatctgtctcactctaactctgagatgcaagtgaatctactag 455

                                                                       
Query: 64  taataatttgtaatacaaaatggatggtagctctagttccaggattcaaattatccatag 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 taataatttgtaatataaaatggatggtagctctagttccaggattcaaattatccatag 395

                                                                       
Query: 124 aaatatagaaaaaaaaaaacaacttacggggctccacaaagagctctatgccagttccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaatatagaaaaaaaaaaacaacttacggggctccacaaagagctctatgccagttccaa 335

                                                                       
Query: 184 aaaacatctgtcgggtgtcccaggagcacgttataatcttgctttgcagataaccagtct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaaacatctgtcgggtgtcccaggagcacgttataatcttgctttgcagataaccagtct 275

                                                                       
Query: 244 gggaccagccctgggcctgggtttcaacatctgtgtcttgccttttaggctgcaactcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gggaccagccctgggcctgggtttcaacatctgtgtcttgccttttaggctgcaactcag 215

                      
Query: 304 cctatagaggc 314
           |||||||||||
Sbjct: 214 cctatagaggc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no175_o22.g1 MSMg01no175_o22.g1 CHROMAT_FILE:
MSMg01no175_o22.g1 PHD_FILE: MSMg01no175_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:07 2005
         (286 letters)



>mm_chr14_54614145_54614830
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacataaaagtataatatatagtacaggacatgtaagtgtatacagtgcataatactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacataaaagtataatatatagtacaggacatgtaagtgtatacagtgcataatactca 260

                                                                       
Query: 61  ctgacaataactatatttccaacatacattaactattctctttagctgcattttagaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgacaataactatatttccaacatacattaactattctctttagctgcattttagaact 320

                                                                       
Query: 121 ccttataaaattatagttgaaatttaaaaccaaaaataaatgtgaaaatataaaatgact 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 ccttataaaattatagttgaaatttaaaaccaaaaagaaatgtgaaaatataaaatgact 380

                                                                       
Query: 181 attagagtataaaagagagaatagagaaaagttgtgggtgatggggggtaagtacaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagagtataaaagagagaatagagaaaagttgtgggtgatggggggtaagtacaataa 440

                                                         
Query: 241 aagtaatatgtatgtatgaacattttataatgaagtgcatggtgtg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtaatatgtatgtatgaacattttataatgaagtgcatggtgtg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)