Query= MSMg01no176_g05.b1 MSMg01no176_g05.b1 CHROMAT_FILE:
MSMg01no176_g05.b1 PHD_FILE: MSMg01no176_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:04 2005
(672 letters)
>mm_chr14_85604905_85605978
Length = 1074
Score = 1108 bits (573), Expect = 0.0
Identities = 659/708 (93%), Gaps = 37/708 (5%)
Strand = Plus / Minus
Query: 1 gatgctagattatagataaatgatca-gtaaatataaatacctgacatataaataataga 59
||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 793 gatgctagaatatagataaatgat-aggtaaatataaatacctgacatataaataataga 735
Query: 60 catctatacatgtaagacttcaaaagtatattctatatacagatatttacatgtatatta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 catctatacatgtaagacttcaaaagtatattctatatacagatatttacatgtatatta 675
Query: 120 tgtaattttataatt-aaaatatttgttcagaattattaccctgaagcaattgcaatttt 178
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 674 tgtaattttataattaaaaatatttgttcagaattattatcctgaagcaattgcaatttt 615
Query: 179 aaggcttaggtggatttttttttctctaagcaaaattatgattaatctaaaaatgttcag 238
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 614 aaggcttaggtggatttttttttctccaagcaaaattatgattaatctaaaaatgttcag 555
Query: 239 acattattatatctggccaaggaataggaatagtg-accatttaaaacatttcttaatca 297
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 554 acattattatatctggccaaggaataggaatagtgtaccaaataaaacatttcttaatca 495
Query: 298 gttcagt-aaaaagatctttggaaaacaattagaaatgctgccaaattgcttgctacttg 356
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gttcagtaaaaaagatctttggaaaacaattagaaatgctgccaaattgcttgctacttg 435
Query: 357 acaaatattttgtggctcataaattctctttgaaggctttaggcaaatttaatcagagta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 acaaatattttgtggctcataaattctctttgaaggctttaggcaaatttaatcagagta 375
Query: 417 agtgaaaaaatattctcctaagattaggaagacacacag----------------acata 460
||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 374 agtgaaaaaatattctcctaagattaggaagacacacagaaacacacacacacacacaca 315
Query: 461 cacacacacacacacacacacacacacacaca----------------cacacacacaca 504
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 314 cacacacacacacacacacacacacacacacatacacacacacacatacacacacacaca 255
Query: 505 agtaatctcggttttattagatttatcaaattatgtgctanactatttctcgtcccttga 564
|| ||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||
Sbjct: 254 agaaatctcggttttattagatttatcaaattatgtgctaaactatttctcctcctttga 195
Query: 565 tgcatgttttaaaaaagaagtcttcgtttcagagtttaatactttcaagaaagttgagca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tgcatgttttaaaaaagaagtcttcgtttcagagtttaatactttcaagaaagttgagca 135
Query: 625 agttacatcctgggtttgaaaatattaactcttactattttcttctga 672
||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 134 agttacatcttgggtttgaaaatattaacacttactattttcttctga 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1074
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1064
Effective search space: 704368
Effective search space used: 704368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_g05.g1 MSMg01no176_g05.g1 CHROMAT_FILE:
MSMg01no176_g05.g1 PHD_FILE: MSMg01no176_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:04 2005
(582 letters)
>mm_chr14_85454602_85455583
Length = 982
Score = 1087 bits (562), Expect = 0.0
Identities = 577/582 (99%)
Strand = Plus / Plus
Query: 1 accttttcactttttctgccatgtctatcaacacatgcatacctgaaacaactaggcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accttttcactttttctgccatgtctatcaacacatgcatacctgaaacaactaggcatt 260
Query: 61 gtcttttggcaataatatgtgaaaaccattcttagataatatccatgctacatgaacatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttttggcaataatatgtgaaaaccattcttagataatatccatgctacatgaacatc 320
Query: 121 atagaacatgattatgcagacaaagatggctacagtgtagcctaataaggcaatgcaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaacatgattatgcagacaaagatggctacagtgtagcctaataaggcaatgcaaga 380
Query: 181 gtataacatcactgtagattgtgtgtactgacattaatgatataaaccaaataatgtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtataacatcactgtagattgtgtgtactgacattaatgatataaaccaaataatgtgag 440
Query: 241 tttatgcaaatgaacacatttagacaaaaaggaatcatatattccttacaaatttaatat 300
|||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 441 tttatgcaaatgaacatatttatacaaaaaggaatcatatattccaaacaaatttaatat 500
Query: 301 atgagtttactgtatgcattttactagtagatattaatgttcagacttttcattacaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgagtttactgtatgcattttactagtagatattaatgttcagacttttcattacaata 560
Query: 361 ttttaatacatgcaaataacctatattgatcatcttcacatctcttaatatttcttatat 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttaatacatgcaaataatctatattgatcatcttcacatctcttaatatttcttatat 620
Query: 421 accacccttctatttctattttttcctactacttatttcctaccttccatatatgagaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accacccttctatttctattttttcctactacttatttcctaccttccatatatgagaga 680
Query: 481 agaaatgaaatgccttgcctgtagatatattttgtgtgtgtgaggttaagtaattataat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaatgaaatgccttgcctgtagatatattttgtgtgtgtgaggttaagtaattataat 740
Query: 541 tgtgtaatgatttctaatttcattgtttttcattttggtttg 582
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgtaatgatttctaatttcattgtttttcattttggtttg 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
