Query= MSMg01no176_i10.b1 MSMg01no176_i10.b1 CHROMAT_FILE:
MSMg01no176_i10.b1 PHD_FILE: MSMg01no176_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:22 2005
(643 letters)
>mm_chr14_27361965_27363006
Length = 1042
Score = 540 bits (279), Expect = e-157
Identities = 334/359 (93%), Gaps = 18/359 (5%)
Strand = Plus / Minus
Query: 297 accaggtatagccaggcagtggtg----ttttatgcttttaatcct---acttgggaggc 349
|||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1042 accaggtatagccaggcagtggtggcac----atgcttttaatcctagaacttgggaggc 987
Query: 350 agaggcaggcagatttctgagttcaaggccagcctagtctacagagtgagttccaggaca 409
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 986 agaggcaggcagatttctgagttcaagaccagcctagtctacagagtgagttccaggaca 927
Query: 410 gccagggctacacagaaaaaccctgtctcaaaaaaccaaaaacaaaca---aaa-aaaca 465
| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 926 gtcagggctacacagagaaaccctgtctcaaaaaaccaaaaacaaacaaacaaacaaaca 867
Query: 466 aacaaaaaaga-caaccaaacaaaccaggtatatagtttcttaagagactattcttatta 524
||||||||| | |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 866 aacaaaaaa-accaaccaaacaaaccaggtatatagttacttaagagactgttcttatta 808
Query: 525 ggaaagacttgttggtctgtttctggatgaaatgtatgatgtgcataacttatcatcaaa 584
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 807 ggaaagacttgtcggtctgtttctggatgaaatgtatgatgtgcataacttatcgtcaaa 748
Query: 585 agtttgggaaagtatacatggtagtaacttttgaatcagggaatcacatttgctaatta 643
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 747 agtttgggaaagtatacatggtagtaac-tttgaatcagggaatcacatttgctaatta 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1042
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1032
Effective search space: 653256
Effective search space used: 653256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_i10.g1 MSMg01no176_i10.g1 CHROMAT_FILE:
MSMg01no176_i10.g1 PHD_FILE: MSMg01no176_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:23 2005
(567 letters)
>mm_chr14_27241165_27242131
Length = 967
Score = 1058 bits (547), Expect = 0.0
Identities = 562/567 (99%)
Strand = Plus / Plus
Query: 1 ttaccatgcctatctgtatatacggtttactttggtgttttgagccagggttcattatat 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaccatgcctatctgtatatacgctttactttggtgttttgagccagggttcattatat 260
Query: 61 aaaccagcctagccttgaattcattgcaatcctcctgcctcagccttccagtttctggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaccagcctagccttgaattcattgcaatcctcctgcctcagccttccagtttctggga 320
Query: 121 tgacaagcatgagccacaaggtcagggtgagtgactttccagtcactctcccaggagcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacaagcatgagccacaaggtcagggtgagtgactttccagtcactctcccaggagcgt 380
Query: 181 acagctccagcactagtgttgccctagtttgccttctggaagaacagttcattaaatatg 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagctccagcactagtattgccctagtttgccttctggaagaacagttcattaaatatg 440
Query: 241 acattctctttgatagttaaacaacagaccaggcttctgctacaataaatctctcatatc 300
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 accttctctttgatagttaaacaacagaccaggcttctgctacaaaaaatctctcatatc 500
Query: 301 agtcaattgttagagaaaaattaaaactaactcttacgtatgtttgaaaacaaacacttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcaattgttagagaaaaattaaaactaactcttacgtatgtttgaaaacaaacacttg 560
Query: 361 ataaattatctcgatatggaccatgacgcacacctggaaatgaccaggctggagtgttcc 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ataaattatctcgatatggaccatgacgcacacctggaaatgaccaggttggagtgttcc 620
Query: 421 aagtgccaactgacgggtaatatggtttctgcttctctttatttctaagtagcatggatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtgccaactgacgggtaatatggtttctgcttctctttatttctaagtagcatggatg 680
Query: 481 tctgatttgcctttggctttaagtccaaccataactggactcagaatgtctttccgcttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgatttgcctttggctttaagtccaaccataactggactcagaatgtctttccgcttt 740
Query: 541 acctctttctgtacatcctttgcttgg 567
|||||||||||||||||||||||||||
Sbjct: 741 acctctttctgtacatcctttgcttgg 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
