BAC Information

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BAC

Clone NameMSMg01-177A12
Chromosome14 (Build37)
Map Location 88,754,544 - 88,754,848
singlet/doubletsinglet
Overlap geneLOC668624
Upstream geneTdrd3, LOC100043317, LOC100043780
Downstream geneLOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177A12.T7 (MSMg01no177_a12.b1)MSMg01-177A12.TJ (MSMg01no177_a12.g1)
ACCAG371547AG371548
length717758
length of high quality
(start - end)
585 (66 - 650)323 (77 - 399)
definitionCHROMAT_FILE: MSMg01no177_a12.b1 PHD_FILE: MSMg01no177_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:30 2005CHROMAT_FILE: MSMg01no177_a12.g1 PHD_FILE: MSMg01no177_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXATCGAAGAGAGGATCCGCGG
AATTCCAGTTTCCGAGCTGCTTCTGTCCTGGATGTGGTCAGCCAACTCAG
TGAAGATGGAGATTATGTTGTATTGAATAAACTTTAAAGAAAAAATGAAA
GAATAAGAAATAATTTTTTCTTTCATTAAAAATAGATTTTTTTCATAGAA
ATTTTCCTGATTACTTTTTTTCCCTCCCTCGGGGAACTTCTCCAATTTCT
TCCCTAACTCTTTCTTCACCCAAATCCACTCTCCTCCTTCCCACCTCCCA
GCCCCTTTCTCATTATAATACTAATAAGCATCTAAGGAATAGGGATAAGA
TAAAATAAAGTAATATAAAACGAAAACAAATATATTGGAACAAGACAATA
CAAACAGACAAACAAACAGAAGGAAGAAAGAGTGTCCTAGAAAATGCATA
GGGAACAGACATAGGTGCAGAGACCCATTCATTCCCACATTCAGGAGTAT
CATATAAAATAGAAACAGGAAGCCATTACATATACTAAGGACCTTTAGGG
TTAAAACATGAAAATAGAACATTAAAAAAAAAAGACATATTTATTAACAA
CAGGAACAATTAAAAGCTATGACATGACATCATGAAACAAGAAACCTCCA
TAGATGCCTGTGAGGGTCTTTTCTGTCTTCCCTCTGAAGCTTTGGATTCA
AAAATTTCTAAAAGTAN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTAAATGGAT
GATAAGCACCTGAAAAAATATCCAGCATCCTTAATCACCAGGGAAATGCA
AATCAAAACAACCCTGTGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAGTTCAGGTGACAGTAGATGCTGGCAAGGATGTGGAGAAAGAGAA
ACACTCCTCCATTGCTGGTGGGACTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCAGTTCCTTATAAAATTGGACAAAGTACTACTGGAAGATC
CAGCCATACCTCTCCTGGGCATATATCCAGAAGATGTTCAAACTGGTAAT
AAGGACACATGCTCCATTATGTTCATAAGCACCCTTATTTATTATTATAA
ATAATAAATATATTTATTTATAATATTATTTATTATATAACAATATTATT
TCAACTTATATATAAATCTATAATTTATCCCTCTGTTTATATCTCCTAAA
GTACTTCCCCCAAATCACACGCCCATTATTCTTTTATAAATCCCCACCCC
TCTCCCATCCTCTTATACTAATCACACAATCACACCATAACATTGTGAAC
AATAGATCATAAACCCATATTACCTCCTCCGTTCTTCCACCCCTCCTATC
CCTTCTATATTTTTTCTCTATTATTCTCTCTTCTTCCCTCCTCCCTATTT
ATTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_a12.b1 MSMg01no177_a12.b1 CHROMAT_FILE:
MSMg01no177_a12.b1 PHD_FILE: MSMg01no177_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:30 2005
         (585 letters)



>mm_chr14_88754544_88755528
          Length = 985

 Score =  567 bits (293), Expect = e-165
 Identities = 302/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgcttctgtcctggatgtggtcagccaactcagtgaagatggagattatgttgtattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gctgcttctgtcctggatgtggtcagccaactcagtgaagatggagattatgttgtattg 246

                                                                       
Query: 61  aataaactttaaagaaaaaatgaaagaataagaaataattttttctttcattaaaaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aataaactttaaagaaaaaatgaaagaataagaaataattttttctttcattaaaaatag 186

                                                                       
Query: 121 atttttttcatagaaattttcctgattactttttttccctccctcggggaacttctccaa 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atttttttcatagaatttttcctgattactttttttccctccctcggggaacttctccaa 126

                                                                       
Query: 181 tttcttccctaactctttcttcacccaaatccactctcctccttcccacctcccagcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tttcttccctaactctttcttcacccaaatccactctcctccttcccacctcccagcccc 66

                                                                       
Query: 241 tttctcattataatactaataagcatctaaggaatagggataagataaaataaagtaata 300
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  tttctcattataaaacaaataagcatctaaggaatagggataagataaaataaagtaata 6

                
Query: 301 taaaa 305
           |||||
Sbjct: 5   taaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)