BAC Information

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BAC

Clone NameMSMg01-177I20
Chromosome14 (Build37)
Map Location 18,176,320 - 18,176,503
singlet/doubletsinglet
Overlap genenone
Upstream geneTop2b, Rarb, Tpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177I20.T7 (MSMg01no177_i20.b1)MSMg01-177I20.TJ (MSMg01no177_i20.g1)
ACCAG371909AG371910
length697699
length of high quality
(start - end)
107 (93 - 199)184 (434 - 617)
definitionCHROMAT_FILE: MSMg01no177_i20.b1 PHD_FILE: MSMg01no177_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:08 2005CHROMAT_FILE: MSMg01no177_i20.g1 PHD_FILE: MSMg01no177_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTTGACACAATCCACAGAACTCAAAGTAGACTAACAAG
CAGAAGGGTCCAAGTTTGAATGTTTCAATCTCACTTGGGAGGGAGAAGAA
AGTAATCACAGGAGGTAGTGGAGGGATGGAGGGACCTGGGTGGGAAAGGG
GACAGGGAGGCAAAGAGCTCGAGTGCATTCCTGCGCGGAGTGTTTGGCTG
TTAGCTGATTCATGGTTCTGCGACACGACTCATCTGTGGAACGACGTGGC
CCCCGAATCTGAGAACCTGATTTTGATCGCCAAGGAACACACAATTCGAG
ATGCTCCTGCTGATAACTCTCTCTATTGCACGTAGGGACCGTGGAATACG
ACCACCTCCTTCGCCTGCCCCACATTAACTACCTATGTCGAACACCTATA
GACAATACCAGGGGTTCAGCACACTGGGGACAGTTGTGATAGTCATTTCG
ATTTATTCCATTGATCTATAGCTAGAGCGTGCGAATTCAAGCTTAGATGC
TCTGCACCAAAGACTATGACCAGGCTCTGAGTCACGATCGATGTATATTC
TCACGCTGTATACCTCTATGGCGATGCTAGTGATCTTGTTATTCAAGGCG
CGTGTGTGGTCTGAAACTGCCCCAGCTTTGAGGCTGTGTTGAGCCCA
NNCCACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGAACCCCAAAGAA
CAAAAGGTCATTAAAGCATTTTGATCACAAAGGTCTCACCTGCAGTGAGA
GCTGTAGGTAGGATCCTTGCAGCTGCCCAGTTAGCACCACCTAGGGAGCT
CTTAAATACTGATTCTTTCTTCCATCTAATCAACTAGGGGTGGTGTCCGG
GAAATTTATATTTCCAGTGTTCCCAAGATGTACAGGTCTGGTGTACCGGA
GGCAAGAACAGTGCTTTGATTTCTAATCAGCTCAATCATACCCTGGAAAA
CATTTCTTATGGTTCTAGATTCCCCCCGCAGATGGGAAATATAAGTCTGG
CACTAGATGGTAAGTGGAGCTTGTATAGTCTTTGGGGAATACAGATAATG
TCCTTAGAGATGGCTCTGCAAGAGAACGATGGAGGAATAGACCATAGCAG
GGAGGATTCAGAGGACCTCCAGAGGAGACAACCCCACTGAGGTTCCTAAG
CTGATCCTTCCCTGAGAAGTATCCTTGTAATTCATAAAAAGAAGTCAGGC
AGTTGCACTCTTCAATGAAGCATCCTGATTGTTATGTGCACTTTAAAGGC
ACATATGACCGAATTATAACAACACCAAACAGAATGGCTTTATCTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_i20.g1 MSMg01no177_i20.g1 CHROMAT_FILE:
MSMg01no177_i20.g1 PHD_FILE: MSMg01no177_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:08 2005
         (184 letters)



>mm_chr14_18176120_18176703
          Length = 584

 Score =  310 bits (160), Expect = 5e-89
 Identities = 178/184 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggggaatacagataatgtccttagagatggctctgcaagagaacgatggaggaatagacc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 384 ggggaatacagataatgtccttagagatggctctgcaagagaaagatggagaaatagacc 325

                                                                       
Query: 61  atagcagggaggattcagaggacctccagaggagacaaccccactgaggttcctaagctg 120
           |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atagcaggtaggattcagaagacctccagaggagacaaccccactgaggttcctaagctg 265

                                                                       
Query: 121 atccttccctgagaagtatccttgtaattcataaaaagaagtcaggcagttgcactcttc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 atccttccctgagaagtacccttgtaattcataaaaagaagtcaggcagctgcactcttc 205

               
Query: 181 aatg 184
           ||||
Sbjct: 204 aatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)