BAC Information

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BAC

Clone NameMSMg01-177O05
Chromosome14 (Build37)
Map Location 93,503,210 - 93,628,805
singlet/doubletdoublet
Overlap genePcdh9, LOC668566
Upstream geneLOC638252
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177O05.T7 (MSMg01no177_o05.b1)MSMg01-177O05.TJ (MSMg01no177_o05.g1)
ACCAG372144AG372145
length697694
length of high quality
(start - end)		615 (69 - 683)605 (83 - 687)
definitionCHROMAT_FILE: MSMg01no177_o05.b1 PHD_FILE: MSMg01no177_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:32 2005CHROMAT_FILE: MSMg01no177_o05.g1 PHD_FILE: MSMg01no177_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,503,210 - 93,503,602)(93,628,201 - 93,628,805)
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTATTCCATACTCATTTAACAAATTACTAGTTTGAAACATA
ATTATAAATACAGTTGTGTTGTGCCTTAGGTTTTCCAGTTATGCCATCAA
TATACATCTCTTGCCCCCTGCCCCATTTTCTTGCCCCTAGGAATCACCAT
TTTATACATATTGTAGTCCACATTATGTACTTAGACTTCACCAGAATCAT
ATATCACGTATAAGATAGTTCGTACAGTATTATTCATTCCATATCTGGAT
CATTTTACTTGTATGAAAATCATCATGACTGCTCATGATGTTGGATCAAA
AAGTTGCATTCCCTTGTTTATGAAGACAGAATAATATTCCACTTCTATAC
TTAATTTGGCAGCCTTTTTGCATTTTAACAAAATCACATGACATCTCTGC
TAGACAAATTTTTTTTTTCCATTTTTTATTAGGTATTTCGCTCATTTACA
TTTGCAATGCTATACCAAAAGTCCCCCATAGCCACCCACCCCCTCTCCCC
TACCCACCCACTCCCCTTTTATGGCCCTGGCGTTCCCCTGTACTGGGGCA
TATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA
GGCCATCTTTTGATGCATATGCAGCTAGAGTCAAGAGCTCCGGTGTA

CCCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCACTGTGCTATTATT
TTCAAATGAGGAGCCTGGCGTGAGATTGGTATTGGTCTCACAGCGTTTGC
AGAATTCCAGGTGTAATCAAGGAACTAATACGATTTTATGATGATGAAAA
CACCAGGCACAAACAGAATGGAAATAAGTAGATATTTGGGCCCTGAATTT
AAACTGAGACAAATGTGCCTGTATGAAATGGACTATTATGGGTTTATCTT
CAATTCATTCCAGAAATACACTACAGTAGACCAGTGGACCAGATAATCAC
GTAGAGTTGAAAGTGTGAACGATGTTGTGTAGCCATTCATTGCTTTTGCA
TTATGTAGCAGGCAGAGAGAATTGTTAACCATTCTAAATGCTTGTAAACA
GCAACCTCTTCTGAATAAAAGTCTGCAGCATGCTTGCTAACACCCTGGAA
GCCACCCTATGTCTGCCACAAAAGCAAAACCAAAGGAGAGACTCCTGTGG
CGCTGGATTTTAAAATTATGAGTAGTCATTTGATTATTCTTATTTAAATC
AAGCATTGCCTAAGGTACCTCCAGCCTATACACAGAAACACATTTTGCAT
GTTTCCTGCCCTCTATAACTATTTTAGACTCTATATTTATCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_o05.b1 MSMg01no177_o05.b1 CHROMAT_FILE:
MSMg01no177_o05.b1 PHD_FILE: MSMg01no177_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:32 2005
         (615 letters)



>mm_chr14_93503010_93504024
          Length = 1015

 Score =  667 bits (345), Expect = 0.0
 Identities = 381/393 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcatttaacaaattactagtttgaaacataattataaatacagttgtgttgtgcctta 60
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 201 actcatttaacaaattactagtgtgaaacataattataaaaacagttgtgttgtgcctta 260

                                                                       
Query: 61  ggttttccagttatgccatcaatatacatctcttgccccctgccccattttcttgcccct 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttttccaattatgccatcaatatacatctcttgccccctgccccattttcttgcccct 320

                                                                       
Query: 121 aggaatcaccattttatacatattgtagtccacattatgtacttagacttcaccagaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaatcaccattttatacatattgtagtccacattatgtacttagacttcaccagaatc 380

                                                                       
Query: 181 atatatcacgtataagatagttcgtacagtattattcattccatatctggatcattttac 240
           ||||||||| |||||||||||||||| ||||||||||||||||||||||| ||| |||| 
Sbjct: 381 atatatcacatataagatagttcgtatagtattattcattccatatctggctcactttat 440

                                                                       
Query: 241 ttgtatgaaaatcatcatgactgctcatgatgttggatcaaaaagttgcattcccttgtt 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ttgtatgaaaatcatcatgactgctcatgatgttggatgaaaaagttgcattcccttgtt 500

                                                                       
Query: 301 tatgaagacagaataatattccacttctatacttaatttggcagcctttttgcattttaa 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 501 tatgaagacagaataatattccacttctatacttaatttggtagcctttgtgcattttaa 560

                                            
Query: 361 caaaatcacatgacatctctgctagacaaattt 393
           ||||| |||||||||||||||||||||||||||
Sbjct: 561 caaaagcacatgacatctctgctagacaaattt 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no177_o05.g1 MSMg01no177_o05.g1 CHROMAT_FILE:
MSMg01no177_o05.g1 PHD_FILE: MSMg01no177_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:32 2005
         (605 letters)



>mm_chr14_93628001_93629005
          Length = 1005

 Score = 1147 bits (593), Expect = 0.0
 Identities = 602/605 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccactgtgctattattttcaaatgaggagcctggcgtgagattggtattggtctcaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 805 agccactgtgctattattttcaaatgaggagcctggcgtgagattggtattgctctcaca 746

                                                                       
Query: 61  gcgtttgcagaattccaggtgtaatcaaggaactaatacgattttatgatgatgaaaaca 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtgtttgcagaattccaggtgtaatcaaggaactaatacgattttatgatgatgaaaaca 686

                                                                       
Query: 121 ccaggcacaaacagaatggaaataagtagatatttgggccctgaatttaaactgagacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccaggcacaaacagaatggaaataagtagatatttgggccctgaatttaaactgagacaa 626

                                                                       
Query: 181 atgtgcctgtatgaaatggactattatgggtttatcttcaattcattccagaaatacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgtgcctgtatgaaatggactattatgggtttatcttcaattcattccagaaatacact 566

                                                                       
Query: 241 acagtagaccagtggaccagataatcacgtagagttgaaagtgtgaacgatgttgtgtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acagtagaccagtggaccagataatcacgtagagttgaaagtgtgaacgatgttgtgtag 506

                                                                       
Query: 301 ccattcattgcttttgcattatgtagcaggcagagagaattgttaaccattctaaatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccattcattgcttttgcattatgtagcaggcagagagaattgttaaccattctaaatgct 446

                                                                       
Query: 361 tgtaaacagcaacctcttctgaataaaagtctgcagcatgcttgctaacaccctggaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtaaacagcaacctcttctgaataaaagtctgcagcatgcttgctaacaccctggaagc 386

                                                                       
Query: 421 caccctatgtctgccacaaaagcaaaaccaaaggagagactcctgtggcgctggatttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caccctatgtctgccacaaaagcaaaaccaaaggagagactcctgtggcgctggatttta 326

                                                                       
Query: 481 aaattatgagtagtcatttgattattcttatttaaatcaagcattgcctaaggtacctcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaattatgagtagtcatttgattattcttatttaaatcaagcattgcctaaggtacctcc 266

                                                                       
Query: 541 agcctatacacagaaacacattttgcatgtttcctgccctctataactattttagactct 600
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 agcctatacacagaaacacattttgcatctttcctgccctctataactattttagactct 206

                
Query: 601 atatt 605
           |||||
Sbjct: 205 atatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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