BAC Information

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BAC

Clone NameMSMg01-178B15
Chromosome14 (Build37)
Map Location 50,490,149 - 50,556,169
singlet/doubletdoublet
Overlap geneOlfr722, Olfr723
Upstream geneExoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006
Downstream geneOlfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178B15.T7 (MSMg01no178_b15.b1)MSMg01-178B15.TJ (MSMg01no178_b15.g1)
ACCAG372291AG372292
length754717
length of high quality
(start - end)		294 (61 - 354)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no178_b15.b1 PHD_FILE: MSMg01no178_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:49 2005CHROMAT_FILE: MSMg01no178_b15.g1 PHD_FILE: MSMg01no178_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(50,490,149 - 50,490,438)(50,555,875 - 50,556,169)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTCATGCAGGGAGGATTCTGATAAGGGAGGAAAGTTCAT
CTGGAATTGGAGAAATGAACAATTAGAGGAAGGAGAAGTAAATTTTCTAG
AAATTACTCAGTTTAAAAAGTCATCTTACACAAGTCCCTTCCAGTCCCGC
CAGCACTGGGGTAGCTAGGGCCCAGATTTGGCTGACACCCACAAGCTACC
CACAAGACCCACTATGGGATCTTAAGACCTCTGGTGAGTGGAACACAGCT
TCTGATCCAATCCTATCTCTCAGGACCTGAGATTGCATTAATCAGGAAAG
CAGATTATTTGTCCTGACCACCCCCACAAGTCCCTTCCAGTCCATGCCAG
CACAGGTGTACCCCCCCCCCAAAAAAAAGATAACACCTGTAAGGTATACT
CCGTATCCTCCATGGAATCTTAATACCTCTGTGAGTTGATCATATTTTCT
GCCAGGCCTATCTTTGCCTTCCCTCAATTGTTTCTCCTTCCCTGTCTCTA
TCCGTTTCTTACTCCCCTTTAATTTTTCTGTAACCCTGTGTTTTATTCCG
TTATCCTCGTTTTTTCACCTCTCGCCCCCCTATTCACCTACTTTATACAT
TCTCCTTTTTTTCCCACCCTATATTGCCCCTTTCCCCGCTTGTTCTTACA
CCCCCCTATATTTTTCGCTCCTGTGTGCCAGTTTGCTTATTTGCATATAT
CTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTCGCAGATAGTTCTGTCAG
ATCGCCCCAAGAAGCTGCTGCTGCTTCTTTCCATCTTACTGTTCCTTATG
TGGTACATATAAAATCCCAGCAAAGTGCTTCTACCTGTATTACCTGTCTT
TCCTGCCTGTAAAGATCCTGTGTGACAGGAGTCTAAGAGCTGTGAATCCT
AAAAATTAAGATAAAATTGAAAAGTTCAGAAAAAAAATGTGGTATTTTCT
CAAATGAAAGCTTTTCTAATATGTGTTTTTCACAGAATATTTTCTTCTTC
AAAACTCTATTCTTCTTAAACCTTTCTGAATATCTTCATGCATTAGTTTC
GGTGGATTACACAATACCAACCCAAATTAGTTCATTGCTCAATTCTGACA
AGTTGGAGACATGAAATTCAAAACTATTCTTTGAATTTTTTTTCTGAAAG
GTAATTAAGTTTATTCATCATTTACTGTCCTATGTGCAAACTACCCAGTG
AAACTCAAGCAGAGATGAAGAAGTGAGGAGTTATGATCTATGGAGACCCT
GATATTTATAGTTGCTAGAAATTATAAATAGACATTTTTTTAGTACTGTA
TTTATTTTAAAGCGTTTGCAATTTAAAATAAACAATAATCCTTTGTAGAC
TCTTTCTAATCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_b15.b1 MSMg01no178_b15.b1 CHROMAT_FILE:
MSMg01no178_b15.b1 PHD_FILE: MSMg01no178_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:49 2005
         (294 letters)



>mm_chr14_50489945_50490638
          Length = 694

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   atgcagggaggattctgataagggaggaaagttcatctggaattggagaaatgaacaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 atgcagggaggattctgataagggaggaaagttcatctggaattggagaaatgaaaaatt 264

                                                                       
Query: 65  agaggaaggagaagtaaattttctagaaattactcagtttaaaaagtcatcttacacaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaggaaggagaagtaaattttctagaaattactcagtttaaaaagtcatcttacacaag 324

                                                                       
Query: 125 tcccttccagtcccgccagcactggggtagctagggcccagatttggctgacacccacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcccttccagtcccgccagcactggggtagctagggcccagatttggctgacacccacaa 384

                                                                       
Query: 185 gctacccacaagacccactatgggatcttaagacctctggtgagtggaacacagcttctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctacccacaagacccactatgggatcttaagacctctggtgagtggaacacagcttctg 444

                                                             
Query: 245 atccaatcctatctctcaggacctgagattgcattaatcaggaaagcaga 294
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 atccaatccaatctcacaggacctgagattgcattaatcaggaaagcaga 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no178_b15.g1 MSMg01no178_b15.g1 CHROMAT_FILE:
MSMg01no178_b15.g1 PHD_FILE: MSMg01no178_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:49 2005
         (295 letters)



>mm_chr14_50555675_50556369
          Length = 695

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcctcgcagatagttctgtcagatcgccccaagaagctgctgctgcttctttccatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tctcctcgcagatagttctgtcagatcgccccaagaagctgctgctgcttctttccatct 436

                                                                       
Query: 61  tactgttccttatgtggtacatataaaatcccagcaaagtgcttctacctgtattacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tactgttccttatgtggtacatataaaatcccagcaaagtgcttctacctgtattacctg 376

                                                                       
Query: 121 tctttcctgcctgtaaagatcctgtgtgacaggagtctaagagctgtgaatcctaaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tctttcctgcctgtaaagatcctgtgtgacaggagtctaagagctgtgaatcctaaaaat 316

                                                                       
Query: 181 taagataaaattgaaaagttcagaaaaaaaatgtggtattttctcaaatgaaagcttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 taagataaaattgaaaagttcagaaaaaaaatgtggtattttctcaaatgaaagcttttc 256

                                                                  
Query: 241 taatatgtgtttttcacagaatattttcttcttcaaaactctattcttcttaaac 295
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 255 taatatgtgtttttcacagaatattttcttcttcaaaactctatacttcttaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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