Query= MSMg01no178_n19.b1 MSMg01no178_n19.b1 CHROMAT_FILE:
MSMg01no178_n19.b1 PHD_FILE: MSMg01no178_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:44 2005
(643 letters)
>mm_chr14_117546191_117547233
Length = 1043
Score = 1096 bits (567), Expect = 0.0
Identities = 621/641 (96%), Gaps = 7/641 (1%)
Strand = Plus / Plus
Query: 5 gaattctaagtataactaatgcaagctcttaccattgtatgaaaattagccaattccttg 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 204 gaattctaagtataaataatgcaagctcttaccattgtatgaaaattagccaattcattg 263
Query: 65 ctgagaaactcactgactatatgatatgcattgtcttctccgataaagcttctgagagtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgagaaactcactgactatatgatatgcattgtcttctccgataaagcttctgagagtt 323
Query: 125 tt-ggcatgtttggcagatagtagtgacatttgcacattagaataataaatacaggatat 183
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttggcatgtttggcagatagtagtgacatttgcacattagaataataaatacaggatat 383
Query: 184 aatctcttaaaagttggagagataccattttctatttagctccattctgtctgatatagt 243
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 aatctcttaaaagttggaaagataccattttctatttagctcccttctgtctgatatagt 443
Query: 244 gttattcaaggacagaagactgatactttccgagctaccccatccctgctctcctttgaa 303
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 gttattcaaggacagaagactgatactttccgaactaccccatccctgctctcctttgaa 503
Query: 304 ttcttaaaaaacaacaaacttacacatgtcatgcacctcacccagagtggtggtggctca 363
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 504 ttcttaaaaaacaacaaacttacacatgccatgcatctcacccagagtggtggtggctca 563
Query: 364 gtccca-gccccaaacacagaagctttggtcaaagggcttgccatgagctggagggaagt 422
|||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 564 gtcccatgccc-aaacacagaagctctggtcaaaggggttgccatgagctggagggaagt 622
Query: 423 ctggaattcagagtgcgtttcaggctagcatggcctaagatgttaaacttgtctagcaag 482
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctggacttcagagtgcgtttcaggctagcatggcctaagatgttaaacttgtctagcaag 682
Query: 483 tccaaatataacaaataaaataatatgctttttaattacgttagtctctgaacaatatta 542
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 683 tccaaatataacaaataaaataatatgctttttaattacgttagtctctgagcaatatta 742
Query: 543 ctaactaaaagaaagaatgaacgaacaaacaaatcaatcaatcaatcaatcaataaatac 602
||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 743 ctaactaaaagaatgaatgaatgaacaaacaaatcaatcaatcaatcaat----aaatac 798
Query: 603 aacatatattaaggattgaacgaacactaaaaatttctgag 643
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aacatatattaaggattgaacgaacactaaaaatttctgag 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_n19.g1 MSMg01no178_n19.g1 CHROMAT_FILE:
MSMg01no178_n19.g1 PHD_FILE: MSMg01no178_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:44 2005
(565 letters)
>mm_chr14_117682703_117683667
Length = 965
Score = 1002 bits (518), Expect = 0.0
Identities = 551/562 (98%)
Strand = Plus / Minus
Query: 1 ctaagccagaacgagggtgtggccatgcatatgttggttctacttctgcagttgagtaag 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ctaatccagaacgagggtgtggccatgcatatgttggttctacttctgcagttgagtaag 703
Query: 61 aatctaaaattaatgaagctatgttctcccttaagctacaggtaaaatgacaggtgaaaa 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aatctaagattaatgaagctatgttctcccttaagctacaggtaaaatgacaggtgaaaa 643
Query: 121 cttgaatcattgctatatgatttctgccataactggaggagacttacatggcacagactt 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 642 cttgaatcattgctatatgatttctgccataactggagaagacttacatggcacagactt 583
Query: 181 cttgtgtggaattcctaatattacttaaatctagtgaaaggaaaatcacctggaaagtga 240
|| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 582 ctcatgtggaatacctaatattacttaaatctaatgaaaggaaaatcacctggaaagtga 523
Query: 241 ctgagtgtagtgaacagtagcgcatggagtatagttcttagaaatggtttaatagcgata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 522 ctgagtgtagtgaacagtagcgcatggagtatagttcttagaaatggtttaatagtgata 463
Query: 301 taatgacaattgctgtgggcattttccttcattatctctgccacataccagtgtttcttt 360
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 462 taatgacaattgctgtgggcattttccttcattatctctgtcacataccagtgtttctct 403
Query: 361 agggatccaccctcacacatgactattacataacctatttagtcatagccacagaaatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agggatccaccctcacacatgactattacataacctatttagtcatagccacagaaatac 343
Query: 421 ttggacttctaacaatggattcctgatgacaaatatcgacatctgtgctggccttaaact 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttggacttctaacaaaggattcctgatgacaaatatcgacatctgtgctggccttaaact 283
Query: 481 aaagaaaccccaaaagataccagggaggcccacataattctgtcgacaggtatgtttatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aaagaaaccccaaaagataccagggaggcccacataattctgtcgacaggtatgtttatg 223
Query: 541 tgcctctcacaggcatttgctc 562
||||||||||||||||||||||
Sbjct: 222 tgcctctcacaggcatttgctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
