BAC Information

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BAC

Clone NameMSMg01-178P11
Chromosome14 (Build37)
Map Location 94,339,136 - 94,339,333
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178P11.T7 (MSMg01no178_p11.b1)MSMg01-178P11.TJ (MSMg01no178_p11.g1)
ACCAG372896AG372897
length733761
length of high quality
(start - end)		686 (46 - 731)198 (78 - 275)
definitionCHROMAT_FILE: MSMg01no178_p11.b1 PHD_FILE: MSMg01no178_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:51 2005CHROMAT_FILE: MSMg01no178_p11.g1 PHD_FILE: MSMg01no178_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGGCAACATCAAAGTAAATGCAGAGAAGCTGGAAGCAATCCCACTAAAT
CAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTCAACATAGTAC
TTGAAGTATTATCCAGAGCAATTTGACAAAAAAAGGAGATCAAGGGGATA
CAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGA
TAAGCAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCA
ATGGCCTTTCTCTATACAAAGAATAAAGAGGCTGAGAAAGAAATTAGGGA
AACAACACCCTTCTCAATAGTCACAAATAGTATAAAATATCTTGGCGTAA
CTCTAACTAAGGAGGTGAAAGATCTGTATGTTAAAAACTTCAAATCTCTG
AAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTC
AGGATTGTCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAAT
CTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACG
AATTAGAAGGAGCAATTTGCAAATTCATCTGGN

CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATATGATATGAAATGGAAATTTA
GTTTAGAATACGGAAAGGAATCATTTGAAAATAAATCACTTAAATTATAT
TACTTTTAAAAGAATTAGTATTCAATTCTCTTATCCATTTTATAAATTAG
TCTTCACCTTCCTGGGCAATATGTGTGTATATATATATATATATATATGT
GTGTGTATATATATGTATATATATACATATAGAGGGGTGGAGAGATATAT
ATACACACATAGAGCGGGGTGTGGGGGGGAGACTTATATATTGTGGGNGA
GAGAGAGATGTTTATTCTCCCCCCGCGCAGCACAATCTGTGAGAGATATT
TTCCCGAGAGTGTTCTGTGTGCCCCCACAAAATATAAACATTTCATATCA
TATGAGGTGTGCGGTGCCTCTATATAGTGTGCATATATAATATAGGGACA
GGCGGGCGTGCGTGCGTATACTACTAAACGGTATTGGTTGGGTGGGAGAT
TCACATATAAATTTGCTCGTACGTAATTTATCGCGGTCCCGTGGGGGGGG
TGGTGAATTACACGTGGTAGTGGGTGTTCGGGAGTTTGGGAGTTACTAAG
TGGGAGCCGGCGCGTATCCGGTCTTCGCACTGTAGCGCGGGGGGCGCGGG
TTAGAATCGGCGACAAAGAGATATGGTTCTTGTATCAGCGGGGAATGATC
CTATCTCTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_p11.g1 MSMg01no178_p11.g1 CHROMAT_FILE:
MSMg01no178_p11.g1 PHD_FILE: MSMg01no178_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:51 2005
         (198 letters)



>mm_chr14_94338936_94339533
          Length = 598

 Score =  383 bits (198), Expect = e-111
 Identities = 198/198 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgatatgaaatggaaatttagtttagaatacggaaaggaatcatttgaaaataaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgatatgaaatggaaatttagtttagaatacggaaaggaatcatttgaaaataaatc 260

                                                                       
Query: 61  acttaaattatattacttttaaaagaattagtattcaattctcttatccattttataaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttaaattatattacttttaaaagaattagtattcaattctcttatccattttataaat 320

                                                                       
Query: 121 tagtcttcaccttcctgggcaatatgtgtgtatatatatatatatatatatgtgtgtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcttcaccttcctgggcaatatgtgtgtatatatatatatatatatatgtgtgtgta 380

                             
Query: 181 tatatatgtatatatata 198
           ||||||||||||||||||
Sbjct: 381 tatatatgtatatatata 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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