BAC Information

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BAC

Clone NameMSMg01-179C07
Chromosome14 (Build37)
Map Location 18,784,300 - 18,784,652
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179C07.T7 (MSMg01no179_c07.b1)MSMg01-179C07.TJ (MSMg01no179_c07.g1)
ACCAG373018AG373019
length758727
length of high quality
(start - end)
362 (45 - 406)520 (78 - 597)
definitionCHROMAT_FILE: MSMg01no179_c07.b1 PHD_FILE: MSMg01no179_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:05 2005CHROMAT_FILE: MSMg01no179_c07.g1 PHD_FILE: MSMg01no179_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGGTTAGACCTCTCAAGTTTGAGGTAATCACACTAAAGATCACA
GAGCTTCTATTTAGCATATTAGGAAGGCTCCAGCAGCTGCAGGAACCTCC
CTATTGAAGAGCTTCACAGGGCCCCACAAGAGACAGTCGCTTGCTTACTG
CAGGGCTAGACTTCTCTAGTGCTATTGTTTAAGGAATAATGTTTATTCTT
ACTGACAGTGAACTCTCATTTTTTGAAAAAAACAAAACAAAACAAAACAA
AACAGACTGGCCTTGTTTTATGGTCACAAATGTGAACTATCTTTTATCAG
GGGATCCATCCCATAATCAGCCTCCAAAGGCTGACATCATTGCATACACT
AGCAAGAGTTTGCTGAACCCCCCCCTGATATAGCTGTCTCTTGTGAGACT
ATGCTGGGATCTATCCCACCCCGAAGCGCATGATCACAGTTAGCTATTGG
ATGGATCACAGGGCCCCCACTGCAGGACTTAGCGAACTTATTCATGGAGT
TTACGTTATCTGTTTCCCTTTCCGCCGTATATCCCCCACGTTTCCCCCCT
GTTATCCTCCCAGTTTTCCGCCTTCCCCTCGTTCCCCTTTTTTTTCCTTT
GTTTTTTCTTTCCCCTTTTTACCCCCTTCTTCCACTTTTCCCTCCCCTTT
TTCTATCATTTTTTCCTCTTTTTACCTCACATTTATCACCATTTCTTTTT
ACCCTCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTATTTAACTTCATAACT
TATTTAGCTTCATAACTTTTACTTGGTGTTTAATTATTCATAATGCCTCT
TCTGTTTTACATGTGAGCAATAACTTTAAGCTTAATTAAACATTGGATGC
ACAGCAGTCCGTACTACCATAAGTTAATCTGAGATCTCAAAGTTGAAGAC
TTCTTATGACACACAGTTTGTTGCTAGTAGGTGTGCCTATGAATGAGGGA
GAACAGCCTGCATACAATGCCTGGGTGCTTCATCCATGTGCTGAGTGCCT
GGGTGCTTCATCCATGTGCTGAGTGCCTGGGTGCTTCATCCATGTGCTGT
GTTCCTGGGTGCTTTATCCACGCGCTGCCTGCCTGGGTACTTCATCCATG
TGCTGCCTGCCTGGGTACTTCATCCATGTGCTGCCTGCCTGGATACTTCA
TGCATGTGTTATGTGCCTGGGTACTTCATCCATGTGTTGCCTGCCTGGGT
GCTTCATCCATGTGCTGAGTGCCTGGGTGCTTCATCCATGTGCTGAGTGC
CTGGGTACTTCATCCATGTGCCATGTGCCTGGGTGCTTCATCCCTGTGCT
GAGTGTCCGCGCGCTTCATCCATGTTTTTGATGTCCGGTTGTTCGTTACC
ATTCCTCTCTGGAGATTGGTTCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_c07.b1 MSMg01no179_c07.b1 CHROMAT_FILE:
MSMg01no179_c07.b1 PHD_FILE: MSMg01no179_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:05 2005
         (362 letters)



>mm_chr14_18784219_18784980
          Length = 762

 Score =  638 bits (330), Expect = 0.0
 Identities = 350/358 (97%), Gaps = 5/358 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaggttagacctctcaagtttgaggtaatcacactaaagatcacagagcttct 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaattctcaggttagatatctcaagtttgaggtaatcacactaaagatcacagagcttct 375

                                                                       
Query: 65  atttagcatattaggaaggctccagcagctgcaggaacctccctattgaagagcttcaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atttagcatattaggaaggctccagcagctgcaggaacctccctattgaagagcttcaca 315

                                                                       
Query: 125 gggccccacaagagacagtcgcttgcttactgcagggctagacttctctagtgctattgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gggccccacaagagacagtcgcttgcttactgcagggctagacttctctagtgctattgt 255

                                                                       
Query: 185 ttaaggaataatgtttattcttactgacagtgaactctcattttttgaaaaaaacaaaac 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 254 ttaaggaataatgtttattcttactgacagtgaactctcattttttgaaaaaaa-aaaa- 197

                                                                       
Query: 245 aaaacaaaacaaaacagactggccttgttttatggtcacaaatgtgaactatcttttatc 304
            ||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 196 -aaacaaaa--aaacagactggccttgttttatggtcccaaatgtgaactatcttttatc 140

                                                                     
Query: 305 aggggatccatcccataatcagcctccaaaggctgacatcattgcatacactagcaag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 aggggatccatcccataatcagcctccaaaggctgacatcattgcatacactagcaag 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)