MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-179P18
Chromosome	14 (Build37)
Map Location	48,347,899 - 48,348,148
singlet/doublet	singlet
Overlap gene	Ktn1
Upstream gene	Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787
Downstream gene	4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864
Link	Open Mouse BAC browser

Click to get alignment info.

name	Cdkn3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72391 MGI:1919641
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 29 ESTs, 2 Proteins

name	Cnih (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12793 MGI:1277202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gmfb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:63985 MGI:1927133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cgrrf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68755 MGI:1916368
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Samd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74480 MGI:1921730
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gch1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14528 MGI:95675
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdhd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218973 MGI:2443514
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Socs4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67296 MGI:1914546
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC670795 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670795
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	C130032J12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218975 MGI:2444022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lgals3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16854 MGI:96778
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dlg7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218977 MGI:2183453
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666895 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666895
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Fbxo34 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78938 MGI:1926188
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D14Ertd436e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218978 MGI:1261775
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG625730 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625730 MGI:3647406
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins

name	LOC100042787 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042787
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein

name	Ktn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16709 MGI:109153
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930447J18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73961 MGI:1921211
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Map1lc3-ps2 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606520
definition	note : microtubule-associated protein 1 light chain 3 pseudogene 2 pseudo : _no_value

name	Peli2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93834 MGI:1891445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG624367 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:624367 MGI:3647773
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	LOC100041831 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041831
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 30 mRNAs, 1611 ESTs, 22 Proteins

name	6720456H20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218989 MGI:2443219
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930572G02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75943 MGI:1923193
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Otx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18424 MGI:97451
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041864 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041864
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 186 ESTs, 6 Proteins

name	Cdkn3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94397016 GeneID:72391 MGI:1919641
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 29 ESTs, 2 Proteins product : cyclin-dependent kinase inhibitor 3, transcript variant 2 transcript_id : XM_899867.2

name	Cnih (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27545444 GeneID:12793 MGI:1277202
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cornichon homolog (Drosophila) transcript_id : NM_009919.1

name	Gmfb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:11993947 GeneID:63985 MGI:1927133
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glia maturation factor, beta transcript_id : NM_022023.1

name	Cgrrf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351150 GeneID:68755 MGI:1916368
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell growth regulator with ring finger domain 1 transcript_id : NM_026832.3

name	Samd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82617645 GeneID:74480 MGI:1921730
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sterile alpha motif domain containing 4 transcript_id : NM_001037221.1

name	Samd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82617651 GeneID:74480 MGI:1921730
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sterile alpha motif domain containing 4 transcript_id : NM_028966.2

name	Gch1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130997 GeneID:14528 MGI:95675
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTP cyclohydrolase 1 transcript_id : NM_008102.3

name	Wdhd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254223 GeneID:218973 MGI:2443514
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat and HMG-box DNA binding protein 1 transcript_id : NM_172598.2

name	Socs4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:49355821 GeneID:67296 MGI:1914546
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppressor of cytokine signaling 4 transcript_id : NM_080843.2

name	LOC670795 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265611 GeneID:670795
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical LOC670795 transcript_id : XM_001478571.1

name	C130032J12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352501 GeneID:218975 MGI:2444022
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C130032J12 gene transcript_id : NM_178684.4

name	Lgals3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803538 GeneID:16854 MGI:96778
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lectin, galactose binding, soluble 3 transcript_id : NM_010705.2

name	Dlg7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21362356 GeneID:218977 MGI:2183453
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : discs, large homolog 7 (Drosophila) transcript_id : NM_144553.1

name	Fbxo34 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357418 GeneID:78938 MGI:1926188
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box protein 34 transcript_id : NM_030236.2

name	D14Ertd436e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802280 GeneID:218978 MGI:1261775
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 14, ERATO Doi 436, expressed transcript_id : NM_172599.2

name	EG625730 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149265618 GeneID:625730 MGI:3647406
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : predicted gene, EG625730 transcript_id : XM_890298.3

name	LOC100042787 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265619 GeneID:100042787
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein product : hypothetical protein LOC100042787 transcript_id : XM_001478679.1

name	Ktn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922637 GeneID:16709 MGI:109153
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinectin 1 transcript_id : NM_008477.2

name	4930447J18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94397050 GeneID:73961 MGI:1921211
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930447J18 gene transcript_id : XM_898953.2

name	Peli2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130804 GeneID:93834 MGI:1891445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pellino 2 transcript_id : NM_033602.2

name	LOC100041831 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265501 GeneID:100041831
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 30 mRNAs, 1611 ESTs, 22 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) transcript_id : XM_001477082.1

name	6720456H20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254232 GeneID:218989 MGI:2443219
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6720456H20 gene transcript_id : NM_172600.2

name	4930572G02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149265623 GeneID:75943 MGI:1923193
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 4930572G02 gene transcript_id : XM_001478734.1

name	Otx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66955882 GeneID:18424 MGI:97451
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : orthodenticle homolog 2 (Drosophila) transcript_id : NM_144841.2

name	LOC100041864 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265509 GeneID:100041864
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 186 ESTs, 6 Proteins product : similar to Rpl11 protein transcript_id : XM_001477137.1

name	Cdkn3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82953890 GeneID:72391 MGI:1919641
definition	codon_start : 1 product : cyclin-dependent kinase inhibitor 3 isoform 2 protein_id : XP_904960.1

name	Cnih (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27545445 CCDS:CCDS26980.1 GeneID:12793 MGI:1277202
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 exception : mismatches in translation product : cornichon homolog protein_id : NP_034049.1

name	Gmfb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11993948 GeneID:63985 MGI:1927133
definition	GO_function : GO:0008083 - growth factor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glia maturation factor, beta protein_id : NP_071306.1

name	Cgrrf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51467882 CCDS:CCDS26981.1 GeneID:68755 MGI:1916368
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0007050 - cell cycle arrest [Evidence IEA] codon_start : 1 product : cell growth regulator with ring finger domain 1 protein_id : NP_081108.2

name	Samd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82617646 CCDS:CCDS26982.1 GeneID:74480 MGI:1921730
definition	GO_component : GO:0019717 - synaptosome [Evidence IDA] GO_function : GO:0030371 - translation repressor activity [Evidence ISS] GO_process : GO:0045946 - positive regulation of translation [Evidence ISS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : sterile alpha motif domain containing 4 isoform 1 protein_id : NP_001032298.1

name	Samd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037381 CCDS:CCDS26983.1 GeneID:74480 MGI:1921730
definition	GO_component : GO:0019717 - synaptosome [Evidence IDA] GO_function : GO:0030371 - translation repressor activity [Evidence ISS] GO_process : GO:0045946 - positive regulation of translation [Evidence ISS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : sterile alpha motif domain containing 4 isoform 2 protein_id : NP_083242.1

name	Gch1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679967 CCDS:CCDS26984.1 GeneID:14528 MGI:95675
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0019438 - aromatic compound biosynthesis [Evidence IEA]; GO:0006729 - tetrahydrobiopterin biosynthesis [Evidence IEA] codon_start : 1 product : GTP cyclohydrolase 1 protein_id : NP_032128.1

name	Wdhd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254224 GeneID:218973 MGI:2443514
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : WD repeat and HMG-box DNA binding protein 1 protein_id : NP_766186.2

name	Socs4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49355822 CCDS:CCDS26985.1 GeneID:67296 MGI:1914546
definition	GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO:0001558 - regulation of cell growth [Evidence IEA] codon_start : 1 note : suppressor of cytokine signaling 7 product : suppressor of cytokine signalling 4 protein_id : NP_543119.2

name	LOC670795 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265612 GeneID:670795
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478621.1

name	C130032J12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520075 GeneID:218975 MGI:2444022
definition	codon_start : 1 product : hypothetical protein LOC218975 protein_id : NP_848799.1

name	Lgals3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859580 CCDS:CCDS26986.1 GeneID:16854 MGI:96778
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IDA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0019863 - IgE binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005529 - sugar binding [Evidence IEA] GO_process : GO:0030198 - extracellular matrix organization and biogenesis [Evidence IGI]; GO:0001501 - skeletal development [Evidence IGI] codon_start : 1 product : galectin 3 protein_id : NP_034835.1

name	Dlg7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21362357 CCDS:CCDS26987.1 GeneID:218977 MGI:2183453
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]; GO:0031616 - spindle pole centrosome [Evidence ISS] GO_function : GO:0004721 - phosphoprotein phosphatase activity [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0008283 - cell proliferation [Evidence ISS]; GO:0007267 - cell-cell signaling [Evidence IEA]; GO:0000087 - M phase of mitotic cell cycle [Evidence ISS]; GO:0007079 - mitotic chromosome movement towards spindle pole [Evidence ISS]; GO:0045842 - positive regulation of mitotic metaphase/anaphase transition [Evidence ISS] codon_start : 1 exception : mismatches in translation note : hepatoma up-regulated protein product : discs large homolog 7 protein_id : NP_653136.1

name	Fbxo34 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21624633 CCDS:CCDS26988.1 GeneID:78938 MGI:1926188
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation product : F-box only protein 34 protein_id : NP_084512.1

name	D14Ertd436e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369860 CCDS:CCDS26989.1 GeneID:218978 MGI:1261775
definition	codon_start : 1 product : hypothetical protein LOC218978 protein_id : NP_766187.1

name	EG625730 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82954029 GeneID:625730 MGI:3647406
definition	codon_start : 1 product : similar to Snrpf protein protein_id : XP_895391.1

name	LOC100042787 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265620 GeneID:100042787
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478729.1

name	Ktn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:144922638 GeneID:16709 MGI:109153
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0019894 - kinesin binding [Evidence TAS] GO_process : GO:0007018 - microtubule-based movement [Evidence TAS] codon_start : 1 product : kinectin 1 protein_id : NP_032503.2

name	4930447J18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82954031 GeneID:73961 MGI:1921211
definition	codon_start : 1 product : hypothetical protein LOC73961 protein_id : XP_904046.1

name	Peli2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118130805 GeneID:93834 MGI:1891445
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 product : pellino 2 protein_id : NP_291080.2

name	LOC100041831 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265502 GeneID:100041831
definition	codon_start : 1 product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) protein_id : XP_001477132.1

name	6720456H20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254233 CCDS:CCDS26993.1 GeneID:218989 MGI:2443219
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC218989 protein_id : NP_766188.2

name	4930572G02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149265624 GeneID:75943 MGI:1923193
definition	codon_start : 1 product : hypothetical protein LOC75943 protein_id : XP_001478784.1

name	Otx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21536266 GeneID:18424 MGI:97451
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IDA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IMP]; GO:0045165 - cell fate commitment [Evidence IMP]; GO:0001708 - cell fate specification [Evidence IMP]; GO:0007417 - central nervous system development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0009953 - dorsal/ventral pattern formation [Evidence IMP]; GO:0042706 - eye photoreceptor cell fate commitment [Evidence IMP]; GO:0030900 - forebrain development [Evidence IGI] [Evidence IMP]; GO:0030901 - midbrain development [Evidence IMP] [Evidence IGI]; GO:0030182 - neuron differentiation [Evidence IMP]; GO:0048663 - neuron fate commitment [Evidence IMP]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : orthodenticle homolog 2 protein_id : NP_659090.1

name	LOC100041864 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265510 GeneID:100041864
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477187.1

name	LOC666895 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666895
definition	number : 1 pseudo : _no_value

name	EG624367 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149265364 GeneID:624367 MGI:3647773
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG624367 pseudo : _no_value transcript_id : XR_035094.1

clone name	MSMg01-080P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353H24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-540F18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-445O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276M01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-353J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066B24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-183J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150I09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-440L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339N12
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-179P18.T7 (MSMg01no179_p18.b1)	MSMg01-179P18.TJ (MSMg01no179_p18.g1)
ACC	AG373594	AG373595
length	791	788
length of high quality (start - end)	250 (60 - 309)	36 (92 - 127)
definition	CHROMAT_FILE: MSMg01no179_p18.b1 PHD_FILE: MSMg01no179_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:07 2005	CHROMAT_FILE: MSMg01no179_p18.g1 PHD_FILE: MSMg01no179_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:07 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGTTTTT ATTAGCTGATGAGGAATAGAGTACTGTGTGCATGCACATGCCCCCATATT TTCAATTCTTGTTCCATTTACCAGTGCTTTGTTTTAGCAATACCCATTTC CAGTGCAATATAAGACGAGTTTTCTGCATGTATTTGGTGTGTATCACACT GACTAGGTCTGTGATACTCCAAAGTTGTATGCCTATAGAATGTTTTGGAA GAATCTTTGTTTTTTGTTTTGTTTTGTTTTTTTAAGACATGGTCTCTCTC TTTAGCCCTGGTTGTCCTAGAACTCACTTTGTAGACCGGACTGACCTCTA TTTTTTATATCCACCCGCCTCTGCCTCCCAAGTGCTGGATTTAAGGTGTC TGCCCCCCCCCCTATAAAAAAAAAAAAAATTTGAGGTTGGTTTTCTCCAT ATTCTTCTTGTTAAATCTCACAATCCTTTCTCCATTTTCTTTCTCTCCTC CTCATCTCCCATCTTCTTTCTCTCCCTCTCCACCATCCCCATTTCCCTAA TCAACCCCCACTTTCTCTTCCTTACTGTCTTGTACTTTTTTTACTTCTTT AACAGATTCACTTTTTTATCTTCCCTCCCCTATCCCTCCCTATTTTTTTT TCATTCTTTTCCCCCCTCTTTTCTTATTTTCTCCTTTTTTCCCCCCTCCC CAATCATCTTATATCTCTCTCCCACTCACCCCTCTCTTTTTCCCCTCTCT CCCATTTACTTTATTTTACTCTCACCACCTCTTATCTTCCN	TTATTTTTCNNNNCCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGAGAG CCAACTTCCATGGGGAAGGGGTGTCATGGTTTGGGAATTTTTTCCTAAAG AGGAAAACCCCCTTACTTTTTCCCAAAAGAAGCTTGGTTTTTCGGGGAAA TTGTGGGTCCCCTCTAGGCCCCCCCCTTGGGGAATTTTACTCCCCTGGGG TTTTTTTTTATATATTATCCCCCTCTTCTAAAAAAACCCATTCTTCTTTT CTTTTTCCCTTTTTCCTTTTTTCCCCATCCCCTTTTTTTCTCCCCCCCTG TATATAAATCCCTTTGCTCGTACCATATATTTTATCTTTTCCCCCTTTTT CCCCCCTTCCGTTACTCTTCCTCCTCTCTTTCTTGTCATCTCCTTCTTTC CCACTCTCCATTTTTTCTTTTTTACTCTTTAAATTTTCCTCTCCTCTCTA ATTCTACTTATCCTCCAAGATTAAATCACCTTTTTTATTTTTTTTTTTAA CCCCCCCCCCCCCCCCCCCTCTCTCTGTTTACTTATTATTTTTTTTCACC ACCTCTCTTTTTAATATCTTTCCCCCACCCCCCCTCCCCCTTATTTTTTA CTATACACTAAATTTATTCTCGCCCCCACGTCCCTTTTGATCACGCTCTA TGTTTTCCCACTCCCTTACCTTACCACATCACCCACTTTTTTTTTTTCCA CTCTTTATTTCCCCCCGCACTCCTCCTATCCTTCTCCN
quality values	Open. Hide. 11 11 25 21 18 19 10 8 8 15 19 33 33 46 30 28 28 28 28 25 22 10 10 8 8 8 10 12 19 15 15 14 17 17 29 29 48 57 36 36 36 36 33 33 50 50 47 37 24 24 10 8 8 6 8 6 6 8 12 19 19 30 41 33 33 33 36 36 36 53 53 57 53 53 57 57 57 57 53 53 53 53 57 57 57 57 57 53 53 53 59 59 53 53 53 53 53 53 57 57 36 36 36 33 26 26 19 28 26 27 10 8 8 8 8 15 19 41 41 37 37 41 41 53 53 57 57 57 57 59 59 59 59 59 59 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 68 68 68 59 59 57 59 57 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 59 43 57 57 59 57 57 57 68 68 57 59 59 48 48 57 59 59 57 57 54 57 57 68 68 68 59 59 47 47 43 47 59 59 68 68 57 57 57 43 43 59 59 59 59 48 48 48 59 59 59 59 59 59 59 50 48 50 47 47 39 29 25 17 10 10 10 10 10 14 21 18 23 20 24 39 59 59 59 59 59 59 59 59 43 37 23 19 11 11 21 23 29 33 39 43 39 46 46 41 30 17 10 8 8 8 10 15 15 15 10 10 11 21 22 23 9 9 6 11 8 8 8 8 11 11 12 12 15 20 25 25 33 33 30 30 28 32 28 23 24 14 14 14 26 26 27 21 12 12 10 12 9 9 9 15 22 30 25 31 31 26 24 22 18 11 11 8 8 8 9 10 8 10 11 11 15 13 11 8 8 8 8 10 10 11 13 18 10 8 8 8 8 8 11 10 10 12 24 19 12 11 8 8 8 6 6 8 8 8 8 8 10 8 6 8 6 6 8 8 8 10 8 8 8 8 8 8 8 13 10 10 9 13 9 9 9 9 11 11 12 15 12 10 9 9 9 9 12 15 18 18 15 13 12 12 10 10 6 6 6 6 8 8 9 9 9 10 9 9 9 10 12 10 15 21 19 15 17 12 10 10 10 13 12 8 9 9 9 8 8 8 8 9 9 9 9 14 13 12 10 10 10 10 10 10 10 10 10 10 9 9 18 13 11 11 10 8 8 8 8 8 8 8 8 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 9 11 10 8 9 9 9 9 9 9 9 10 10 11 11 10 10 10 8 8 8 10 10 9 9 10 10 8 6 6 6 8 10 9 12 12 16 10 10 9 8 8 8 6 6 8 8 8 11 10 10 10 10 8 8 10 10 18 12 12 10 9 12 8 8 8 8 11 11 11 11 11 11 12 11 8 8 10 8 8 12 16 10 8 8 8 8 8 11 13 13 14 14 9 9 16 19 20 17 18 16 24 18 18 16 15 9 9 9 13 13 13 11 12 10 10 10 10 9 9 10 10 9 10 8 8 8 8 8 8 10 10 8 8 9 8 8 6 6 8 10 11 9 8 8 8 8 8 8 8 12 16 20 18 17 14 10 12 6 6 8 8 10 10 12 14 10 13 9 8 10 13 9 8 8 8 8 10 8 9 13 18 14 11 10 10 8 8 8 8 8 8 8 10 8 8 8 8 12 16 11 3 0	Open. Hide. 11 11 11 11 18 15 15 11 3 0 0 0 0 3 6 6 6 7 7 9 8 10 10 10 12 12 20 20 22 14 28 31 40 37 39 37 37 37 37 37 39 39 39 37 33 33 33 33 33 40 43 39 29 29 22 28 28 36 35 57 59 59 57 43 42 42 42 42 48 48 68 68 57 50 48 43 26 30 34 34 34 37 37 47 43 24 21 24 24 28 35 37 41 33 33 33 37 37 37 37 32 31 32 37 33 39 31 30 29 27 28 24 32 41 28 28 25 28 30 29 33 33 33 33 41 18 11 11 8 8 6 6 6 8 8 10 11 14 20 28 18 19 17 16 13 11 11 13 12 12 11 9 9 8 8 8 8 9 11 15 17 13 11 9 9 10 11 18 19 25 14 12 12 12 12 10 8 8 8 8 11 8 8 8 8 8 8 15 13 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 10 10 10 10 8 8 8 8 8 12 11 13 9 12 9 9 10 10 10 10 11 11 11 8 8 8 8 8 8 8 8 9 10 10 11 10 10 10 10 9 13 11 10 8 8 6 8 8 6 6 8 8 8 8 8 6 10 10 9 12 9 8 8 8 8 8 8 8 10 8 11 10 10 8 8 6 7 10 8 8 8 8 8 9 15 13 8 8 8 8 10 10 10 8 8 8 12 11 11 11 8 10 8 12 9 8 9 10 10 10 15 14 9 9 9 9 9 10 10 15 15 23 19 26 12 12 11 8 8 8 8 13 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 8 8 9 6 8 8 8 8 8 9 13 12 12 14 13 10 6 6 6 8 8 10 10 11 11 14 13 12 10 8 8 8 10 10 10 10 10 15 16 16 10 9 9 9 9 9 10 10 10 11 10 10 10 10 10 10 10 10 10 10 9 7 7 8 8 8 8 8 8 8 6 8 8 8 8 8 13 13 23 19 10 8 8 9 9 9 11 10 10 11 10 8 8 8 8 8 8 10 10 8 9 9 9 9 15 8 8 8 8 8 8 10 10 10 10 12 12 11 10 12 16 10 10 8 10 7 6 8 8 8 10 10 13 10 13 10 10 10 8 8 6 8 8 8 8 11 12 8 10 8 8 8 8 8 10 7 6 8 8 9 10 9 10 10 15 15 21 19 15 9 9 7 13 15 37 39 39 37 32 28 19 15 10 10 10 9 11 18 15 18 25 28 27 17 17 17 18 19 30 39 24 17 12 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 6 6 8 8 8 8 8 8 12 12 10 10 10 8 8 8 8 8 8 10 8 8 10 8 11 11 12 9 6 6 6 6 8 8 8 8 10 9 9 8 8 7 7 7 10 12 18 15 15 9 9 9 13 16 10 10 10 10 11 12 10 18 13 10 10 8 8 8 8 8 8 10 8 8 6 6 8 8 12 10 8 8 8 8 8 10 10 8 8 10 15 15 9 9 7 8 8 11 14 11 11 10 10 10 10 8 8 8 6 6 6 8 8 10 11 8 8 8 8 8 8 13 12 9 9 10 10 10 10 11 10 15 8 8 8 8 8 8 8 8 8 8 9 9 10 13 15 15 10 10 11 11 12 22 23 33 30 30 27 22 17 11 10 12 8 8 8 8 8 8 12 9 9 7 10 7 8 10 13 18 16 8 8 6 6 6 6 10 8 10 8 8 8 8 8 8 10 10 10 9 9 9 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no179_p18.b1 MSMg01no179_p18.b1 CHROMAT_FILE:
MSMg01no179_p18.b1 PHD_FILE: MSMg01no179_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:07 2005
         (250 letters)



>mm_chr14_48347699_48348348
          Length = 650

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggaatagagtactgtgtgcatgcacatgcccccatattttcaattcttgttccattt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tgaggaatagagtactgtgtgcatgcacatgcccccatattttcaattcttgttgcattt 260

                                                                       
Query: 61  accagtgctttgttttagcaatacccatttccagtgcaatataagacgagttttctgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagtgctttgttttagcaatacccatttccagtgcaatataagacgagttttctgcat 320

                                                                       
Query: 121 gtatttggtgtgtatcacactgactaggtctgtgatactccaaagttgtatgcctataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatttggtgtgtatcacactgactaggtctgtgatactccaaagttgtatgcctataga 380

                                                                       
Query: 181 atgttttggaagaatctttgttttttgttttgttttgtttttttaagacatggtctctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttttggaagaatctttgttttttgttttgttttgtttttttaagacatggtctctct 440

                     
Query: 241 ctttagccct 250
           ||||||||||
Sbjct: 441 ctttagccct 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information