BAC Information

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BAC

Clone NameMSMg01-180D05
Chromosome14 (Build37)
Map Location 89,202,460 - 89,202,778
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180D05.T7 (MSMg01no180_d05.b1)MSMg01-180D05.TJ (MSMg01no180_d05.g1)
ACCAG373749AG373750
length755725
length of high quality
(start - end)
324 (39 - 362)651 (68 - 718)
definitionCHROMAT_FILE: MSMg01no180_d05.b1 PHD_FILE: MSMg01no180_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:23 2005CHROMAT_FILE: MSMg01no180_d05.g1 PHD_FILE: MSMg01no180_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TCATCAGGGCAGATAAGGTCTCATTGAGACTCTACAGGAAAGCATAGTCT
ACAAGGGTCTCTACCACGTAGTCTATGTATATACTGAGGCTGATCACTTG
CCATGGTCATGGTGTCTGTTCACAGTAGTAAAACCCTACCTAAGACAGAC
CCCTAGCTGCCTGGGTCAGTGTGTCTTTGATTAATTTGTCTGCTCTTGGG
ACTCTTGATTTGCTGGGGACCTTACCCATCCTCAGTGTGAGGGCTTTTGC
CTTGTCTTACTATGTTTTAGAGTGTTTGGTTGTTGTCTCTTAGAGGCTTA
TTCTTTTCTGACACCACACGGGTGAGGAATGGTTCAAGGGAAGGGAAGAA
GTGGGATGGGGAATGGGAGAAAAGATTGTTTGGGGGCGCCGGCCCCCCTT
TCCCATTCATTCTCTCTCCTCTACCCCCCCCTAATCTTTTTTATCAACCC
CTCGACTTAAATTTTTTCTCCCCTACTCATTATCCACTCTTTTTCTTTCT
TATCTTCCCCCACCCACATATAGTTTGCTTTTTATTCTCTTACATACTCC
TTTTATTCCTCTTTTTATTTCAACCCCCCCACCCCCTACTTCCTTTTTCT
TTTATTTGATTCTCCGCCTATTTTTTCCTTTTTCCCCCCTCCCCCCCCCC
TCCCCCATTTTTTTTACTCCCCTTCCCCCCCTTTTTTTTCTCTCCCCTCC
TTTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTAGGCCTGATAAACAGCTTCAATGAAGTAGCT
GGATATAAAATTAACTCAAGCAAGTCAATGGCCTTTCTGTACACAAAGGA
TAAACAGGCTGAGAAAAAAATTAGGGAAACAACACTCTTCTCAATAGTCA
CAAATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGAT
CTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCT
CAGAAGATAGAACGATCTCCCATGCTCATGGATTGGCAGGATCAATATAG
TAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCC
ATCAAAATTCCAACTCAATTCTTCAACGAACTAGAAAGGGCAATAGGCAG
ATTCATCTGGAATAACAAAAAACCTAGGATAGAAAAAACTCTCCTCAAGG
ATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGTTATACTAC
AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGT
AAACCAATGGAATAGAATTGAAGACCCAGAGATGAACCCACACACCTATG
GTCACTTGATCTTTGACAGGGAGCTAAAACCATCCAGTGGAAAAAAAGAC
AGCATTTTCAAAAAATGTTGCTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_d05.b1 MSMg01no180_d05.b1 CHROMAT_FILE:
MSMg01no180_d05.b1 PHD_FILE: MSMg01no180_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:23 2005
         (324 letters)



>mm_chr14_89202256_89202979
          Length = 724

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcatcagggcagataaggtctcattgagactctacaggaaagcatagtctac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcatcagggcagataaggtctcattgagactctacaggaaagcatagtctac 264

                                                                       
Query: 65  aagggtctctaccacgtagtctatgtatatactgaggctgatcacttgccatggtcatgg 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagggtctctaccaggtagtctatgtatatactgaggctgatcacttgccatggtcatgg 324

                                                                       
Query: 125 tgtctgttcacagtagtaaaaccctacctaagacagacccctagctgcctgggtcagtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtctgttcacagtagtaaaaccctacctaagacagacccctagctgcctgggtcagtgt 384

                                                                       
Query: 185 gtctttgattaatttgtctgctcttgggactcttgatttgctggggaccttacccatcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtctttgattaatttgtctgctcttgggactcttgatttgctggggaccttacccatcct 444

                                                                       
Query: 245 cagtgtgagggcttttgccttgtcttactatgttttagagtgtttggttgttgtctctta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagtgtgagggcttttgccttgtcttactatgttttagagtgtttggttgttgtctctta 504

                              
Query: 305 gaggcttattcttttctga 323
           |||||||||||||||||||
Sbjct: 505 gaggcttattcttttctga 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)