BAC Information

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BAC

Clone NameMSMg01-180F22
Chromosome14 (Build37)
Map Location 103,129,782 - 103,130,067
singlet/doubletsinglet
Overlap genenone
Upstream geneLmo7, LOC100043795, LOC545567, LOC669278
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180F22.T7 (MSMg01no180_f22.b1)MSMg01-180F22.TJ (MSMg01no180_f22.g1)
ACCAG373868AG373869
length741745
length of high quality
(start - end)
75 (37 - 111)287 (67 - 353)
definitionCHROMAT_FILE: MSMg01no180_f22.b1 PHD_FILE: MSMg01no180_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:35 2005CHROMAT_FILE: MSMg01no180_f22.g1 PHD_FILE: MSMg01no180_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGA
TCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTT
TTTCTGCTTCCACACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTT
TATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGGA
TTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGT
TCTTGGATTCGGATAGCGACAATTTTATTGAGAATTTTTGCATCGAACAT
CATAGGAGATTTTGTTCTGAACATCTCGACCCACGCTGGATCTTTGAGTG
TTTTGTTTCCCCCCCCCCACAAGAGTTTGTACTCGAACTCATAGATTCTT
TTCTCCCCCCCAACATAATGATAAATTAGAGGGGATGCGCCATCACACTC
GGCAAAATTCACATTTTATTTCCTGTGTATCTGAATTTTGCTTGCGTGCA
TGTATATGCCTATGTATGTGAATACCCTGTGTTTAATGCCCCTTGAAGAT
TTTACGACGCTGTGCTTTTCTTTTTCTGTCTATGAAACATTATATTTTGT
CATTTACTTTTTATTATATTTAAACCTTATTATTTTATTTATCTCTATTT
CTTCCCTTCTCTACTCTTCTATCTTTCCGTACACTTTTTTTATTTTCTCT
CCTCCACCTTTTTTTATTTTTTTTTTATAAAATATCTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATCATGACATATGGTGAGAGGTAAGGGAGGCAGC
TTGTTTCCGTGCACCGGGAGCCAATAATGCCAGGACCACTTAATAATATA
CCAACCATTTCCCACCTAATTGAAATGCCACTTCTGTGGGTTTATTTCTG
GGCTCAATCTTGTTCCATAGACCTATTTGTATATTTTCATAATGGTGCCA
GAATTGTTTTCATTCCAGTAATTTTGTAGTGAATTTAAACATCTGGTAAG
GTATATATTCTTTTTACCACCCTCCTTTCATAACTAACTTTTCTAACAAA
GACTCACTATACAATATAATAAGTCTTAAGTAATTTTATGCATTCCTTCT
CAAAACCCACCCACATTGAAATTGTGCTAGATTAAGAAATTACTATTGAT
GGAAGTATTTTGACCAGAATCTCCATATTGTATAAGCATGTATTAGACCT
TTGCTCCTTCACTAGAACTCATTAGAATATTTTGTATACTTTCACTTAAG
CGGCACTCCCCTATCTTTTCCAATTAGATTTAATTAGTTTTATTTTTAAT
ATTAAGGAAACTACCCCCCTCCAGATATATACAAACTAGCCGCATTATCA
TCTTGCTTTTACCAACTCCTTGCAATCTCCTTCCCTTCCTCGATCGTCTC
TTATATAACCCATATTTCTATATTATATCCTCATATCATCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_f22.g1 MSMg01no180_f22.g1 CHROMAT_FILE:
MSMg01no180_f22.g1 PHD_FILE: MSMg01no180_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:35 2005
         (287 letters)



>mm_chr14_103129750_103130436
          Length = 687

 Score =  501 bits (259), Expect = e-146
 Identities = 280/287 (97%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcatgacatatggtgagaggtaagggaggcagcttgtttccgtgcaccgggagccaata 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 318 atcatgacatatggtgagaggtaagggaggcagcttgtttccgtgcagagggagccaata 259

                                                                       
Query: 61  atgccaggaccacttaataatataccaaccatttcccacctaattgaaatgccacttctg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 258 atgccaggaccacttaataatataccaaccatttcccgcctaattgaaatgccacttctg 199

                                                                       
Query: 121 tgggtttatttctgggctcaatcttgttccatagacctatttgtatattttcataatggt 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 198 tgggtttatttctgggctcaatcttgttccatagacctatttgaatattttcataatggt 139

                                                                       
Query: 181 gccagaattgttttcattccagtaattttgtagtgaatttaaacatctggtaaggtatat 240
           |||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 138 gccagagt-gttttcattccagtagttttgtagtgaatttaaacatctggtaaggtatat 80

                                                          
Query: 241 attctttttaccaccctcctttcataactaacttttctaacaaagac 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  attctttttaccaccctcctttcataactaacttttctaacaaagac 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)