BAC Information

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BAC

Clone NameMSMg01-180H10
Chromosome14 (Build37)
Map Location 17,947,077 - 17,947,391
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
Downstream geneThrb, LOC627608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180H10.T7 (MSMg01no180_h10.b1)MSMg01-180H10.TJ (MSMg01no180_h10.g1)
ACCAG373935AG373936
length731729
length of high quality
(start - end)		---318 (68 - 385)
definitionCHROMAT_FILE: MSMg01no180_h10.b1 PHD_FILE: MSMg01no180_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:42 2005CHROMAT_FILE: MSMg01no180_h10.g1 PHD_FILE: MSMg01no180_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGATGTACTGT
CTTCCTAACACTCTAGGGAAGTCTCTTCGCGTCAGTCCTAAACCTTTAGA
CGACCGTTGCTCCTCTGGCCGTGGATATTTCTGAATCCGAACTAAGACGA
CAGGTGAGCTCCCGATTGACGCGTTTCATCCTATGGCCTCAACATTTACA
TCTCTTTCTACATTTAGTAAGATCAAAGCCGATATTGGCCTCCTGCTCTT
TCCGATATATCTGACGAGTTTGTCCGCTTAGTCTCCGATGCCTATTCATA
AATCTCTTATAAAGAATTGATCCCGCTTCCTGCTTCTCTCTATGGGTCTT
AATCTGAAGACACTACCTCATTCAGCTAAGAGAAAGATCACAGGTTTCCT
CTGGGCAATGACGGCCCAAGATAGAAAACCCTGAGAAATTAATATCGTGA
AACGAAGGTAGGCTTTCTGCGACAGACCATGTGTGATAGATTCGCCTTTA
CATGATTCTTAAGGCCATTTGCTTCCTGCTTGACTCTACTTCATCACTTT
CCCTCACGGATGACGAAGGAGAGAAACGTCACTGTGACCCATGCATCACC
GAGGAGAGGAAAAGCCCTTCGAACTTGACGGCACAGAGTCCATCTCAGCG
CTAACAGGCGCCTAGCTGAATGATGGAAATTCGACCTTCCTGTCTTAAAG
ATAGACTCAGGTTACATCTCGCTTACAGGAA

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATCTCTATGGCTATATGAAACATTTATAAGTAT
AGGGATACTAGCACACACCATTGAATAGATACAAGGGATACTAAAGACAA
CAATTTTCTGCCCTATGAGAACCAGATAAAACAAGAGGAAATAAAGTGAC
GTAACAGTCTAGAATACGTAAGATGAAAACTTGCCTACACATAAAGAGCT
CTTCAGAGAGGCATCTGTTGGGATGTGAGAGTTGCACTCCTCACTTCAAC
TTCTTTAAGCCAGGCAGACTTGCAGCTGCATTCATGGTAGCAAGCAACCG
ACTGAAAACATTACTACGGGNGGGGGGGGGTGTTNNNTNNNNTNNNNTTN
TTGCCCCCCCAAAAAAAAAAACATATCGCTCGTTGTTTCCTTACCTTACT
ACTCGACCCTTTATTCCTTTTTCTCTCCCGATTTTTTATGACGCCCGCAA
ATATAATCATCCCTCCTTATCTACCCTCATTACCCTTTTTTTTCGCTTAT
TCTCTTAAAATTCTCGTATTCATTTTTCACTCGCTTAATTTTTTATTATT
TTGCCCACGTCCGATAATATTTTTTCTCCCCCCCACCCCTATCACTATAA
TTCTCCCCCCATGACTCCCCCCGCCCCTCCAATCCTCTAATTACCCTTTA
TTCCTACATTTATCTATAACACTCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_h10.g1 MSMg01no180_h10.g1 CHROMAT_FILE:
MSMg01no180_h10.g1 PHD_FILE: MSMg01no180_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:42 2005
         (318 letters)



>mm_chr14_17946943_17947654
          Length = 712

 Score =  468 bits (242), Expect = e-136
 Identities = 296/321 (92%), Gaps = 13/321 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctctatggctatatgaaacatttataagtatagggatactagcacacaccattgaata 60
           ||||||||||||||||||||||||||||||||||||||||| |||| |||     |||||
Sbjct: 449 atctctatggctatatgaaacatttataagtatagggataccagcaaaca-----gaata 395

                                                                       
Query: 61  gatacaagggatactaaagacaacaattttctgccctatgagaaccagataaaacaagag 120
           ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 394 ga-ccaagggatactaaagacaacaattttctgccctatgagaaccagataaaacaaggg 336

                                                                       
Query: 121 gaaataaagtgacgtaacagtctagaatacgtaagatgaaaacttgcctacacataaaga 180
           | | ||||||||| ||||||||||||||| ||| |||||||| |||| ||||||||||||
Sbjct: 335 ggagtaaagtgacataacagtctagaatatgtaggatgaaaatttgcttacacataaaga 276

                                                                       
Query: 181 gctcttcagagaggcatctgttgggatgtgagagttgcactcctcacttcaacttcttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gctcttcagagaggcatctgttgggatgtgagagttgcactcctcacttcaacttcttta 216

                                                                       
Query: 241 agccaggcagact-------tgcagctgcattcatggtagcaagcaaccgactgaaaaca 293
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 agccaggcagacttgatttctgcagctgcattcatggtagcaagcaaccgactgaaaaca 156

                                
Query: 294 ttactacgggngggggggggt 314
           |||||||||| ||||||||||
Sbjct: 155 ttactacgggggggggggggt 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 712
Length adjustment: 9
Effective length of query: 309
Effective length of database: 703
Effective search space:   217227
Effective search space used:   217227
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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