BAC Information

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BAC

Clone NameMSMg01-180K04
Chromosome14 (Build37)
Map Location 54,756,037 - 54,756,659
singlet/doubletsinglet
Overlap geneA630038E17Rik
Upstream geneEG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneEG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180K04.T7 (MSMg01no180_k04.b1)MSMg01-180K04.TJ (MSMg01no180_k04.g1)
ACCAG374057AG374058
length718719
length of high quality
(start - end)		627 (45 - 671)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no180_k04.b1 PHD_FILE: MSMg01no180_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:55 2005CHROMAT_FILE: MSMg01no180_k04.g1 PHD_FILE: MSMg01no180_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCATCTTCACACCTGTCTCACTCTAACTCTGAGATGCAAGTGAAT
CTACTAGTAATAATTTGTAATATAACCATGGATGGTAGCTCTAGTTCCAG
GATTCAAATTATCCATAGAAATATAGAAAAAAAAAAACAACTTACGGGGC
TCCACAAAGAGCTCTATGCCAGTTCCAAAAAACATCTGTCGGGTGTCCCA
GGAGCACGTTATAATCTTGCTTTGCAGATAACCAGTCTGGGACCAGCCCT
GGGCCTGGGTTTCAACATCTGTGTCTTGCCTTTTAGGCTGCAACTCAGCC
TATAGAGGCTACAATTCAGAGAATTGCAAAGTTGTCCTTGATGATTCAGG
AGGCCAAGCACACAGCATGTCCTTTTCTTTTGAAGCTGATAGCTGAATGT
TTGGATAGGAAAGTGAGCACAGAGTCTCCATCTAAGAGATGAGGGAACAG
GGCTGAAGCAAAGCAAGAGAGGGTGACAGAGAGCTGACTTCAAGATGCAA
GATTTAACTCCCAATTTATTTGAGAAGGCTGTCAAGAAAAACACAGTAGC
TGGATACAGAGATAGAATATTAAATTTCTTACTGACTGAAAGGCAAGGCG
AGGAGACCTTAGAAACATCGTCTTGAGACAGCCGGCCACCTTCCTGGTGA
GAGCACGGGGGTCTGCCT

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGTTATCCTCAGCTATACAGCAAG
TTTGAGGTCAGCCTTAAGTACATGAGGCCCTACCTCAGAAACATCAAAAC
CAAATAAACACACGAATAAAAGCCAAAGTAATGGATGAAGAAAATATGGT
ACAAACCCAATAAAATTTTATTCAGCCATAAAGAAGAATAAAAGCATGCT
ATCCACAGGGAAATGAGTATAACTGGAGATCATTAAGTTATGCAAGTTAA
GGCAGACTTAGAAAGATAAATCTTATATTTTCTCATATTTGTGGATCACA
CACACACACACACACTCTCATTAGCTGTGCAACTGTCTAAAGAAGGGAAG
GGGAGAGAGAGGGGGATGGGGAGACATCACTGCCAGACATAAAAGTATAA
TATATAGTACAGGACATGTAAGTGTATACAGTGCATAATACTCACTGACA
ATAACTATATTTCCAACATACATTAACTATTCTCTTTAGCTGCATTTTAG
AACTCCTTATAAAATTATAGTTGATATTTAAAACCAAAAATAAATGTGAA
AATATAAAATGACTATTAGAGTATACAAGAGAGAATAGAGAAAAGCTGTG
GGTGATGGGGGGTAAAGCATATAAATCACTATTCATGTATGACCATTTTT
TATCGACGTTAATGGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_k04.b1 MSMg01no180_k04.b1 CHROMAT_FILE:
MSMg01no180_k04.b1 PHD_FILE: MSMg01no180_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:55 2005
         (627 letters)



>mm_chr14_54755834_54756859
          Length = 1026

 Score = 1183 bits (612), Expect = 0.0
 Identities = 621/624 (99%), Gaps = 1/624 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagcatcttcacacctgtctcactctaactctgagatgcaagtgaatctactag 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ggaattcagcatcttcacatctgtctcactctaactctgagatgcaagtgaatctactag 767

                                                                       
Query: 64  taataatttgtaatataaccatggatggtagctctagttccaggattcaaattatccata 123
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 taataatttgtaatataa-aatggatggtagctctagttccaggattcaaattatccata 708

                                                                       
Query: 124 gaaatatagaaaaaaaaaaacaacttacggggctccacaaagagctctatgccagttcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gaaatatagaaaaaaaaaaacaacttacggggctccacaaagagctctatgccagttcca 648

                                                                       
Query: 184 aaaaacatctgtcgggtgtcccaggagcacgttataatcttgctttgcagataaccagtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aaaaacatctgtcgggtgtcccaggagcacgttataatcttgctttgcagataaccagtc 588

                                                                       
Query: 244 tgggaccagccctgggcctgggtttcaacatctgtgtcttgccttttaggctgcaactca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tgggaccagccctgggcctgggtttcaacatctgtgtcttgccttttaggctgcaactca 528

                                                                       
Query: 304 gcctatagaggctacaattcagagaattgcaaagttgtccttgatgattcaggaggccaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gcctatagaggctacaattcagagaattgcaaagttgtccttgatgattcaggaggccaa 468

                                                                       
Query: 364 gcacacagcatgtccttttcttttgaagctgatagctgaatgtttggataggaaagtgag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gcacacagcatgtccttttcttttgaagctgatagctgaatgtttggataggaaagtgag 408

                                                                       
Query: 424 cacagagtctccatctaagagatgagggaacagggctgaagcaaagcaagagagggtgac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cacagagtctccatctaagagatgagggaacagggctgaagcaaagcaagagagggtgac 348

                                                                       
Query: 484 agagagctgacttcaagatgcaagatttaactcccaatttatttgagaaggctgtcaaga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agagagctgacttcaagatgcaagatttaactcccaatttatttgagaaggctgtcaaga 288

                                                                       
Query: 544 aaaacacagtagctggatacagagatagaatattaaatttcttactgactgaaaggcaag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aaaacacagtagctggatacagagatagaatattaaatttcttactgactgaaaggcaag 228

                                   
Query: 604 gcgaggagaccttagaaacatcgt 627
           ||||||||||||||||||||||||
Sbjct: 227 gcgaggagaccttagaaacatcgt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1026
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1016
Effective search space:   626872
Effective search space used:   626872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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