BAC Information

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BAC

Clone NameMSMg01-181C04
Chromosome14 (Build37)
Map Location 22,437,938 - 22,438,610
singlet/doubletsinglet
Overlap geneMyst4
Upstream geneMyoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk
Downstream geneEG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075, EG435392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181C04.T7 (MSMg01no181_c04.b1)MSMg01-181C04.TJ (MSMg01no181_c04.g1)
ACCAG374406AG374407
length719721
length of high quality
(start - end)
676 (44 - 719)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no181_c04.b1 PHD_FILE: MSMg01no181_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:32 2005CHROMAT_FILE: MSMg01no181_c04.g1 PHD_FILE: MSMg01no181_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACCAGGTCTCACACAGCTAGGCACGTGCTCTACCACGCACCTGCAC
TCCCAGCTCATTTTTAATATGCTTGGAAAGTTCACCTTTTGGCATTCTGG
AAAGTGGTGGGTCACAGCACTCCATATGGAATCCTCTATCACAGGAATCA
CAAAAAAGCATGTTATCCTGTAATACAACAGATTAGAGACTAGTTGAGAC
TAAGACCAGCTGAAGAACATCAACACCCAAGTTACCAGGTTAACTAAGAT
GTAATAAAGGAGCCACAGTTTCCCAGTGTGGTGCACCATTACCAATGTTT
AAACACTGCAACATTGTGTTGGAGGAAGAGCCCCCCTCCATCACCGCCCT
GGCGCTGGGATGTGAGGAGCGTACTCACTGCATTTTTGCCCTGGACTCGA
CATGCGCTGCACGTCTTGCACTCGATGCACTGCCACCTCAAGGCCTTCAC
ATTTGCGGTTAACTCAGGACAAAACTTCAGACAGGATGGGTGTCCTGCAA
TACAAAGCAATTGCTCTGTCAGTAAACAGTGCCTTAGTTTATAAAGCCCT
CATTGCCTTCATTCAATGGATGCCACTGAGGCCGACCAGTGAGCCTTATG
AACTCGAGAACAAAACCAGCTGTAGCTGCACGGGCTTACTTTCTCTTCTT
TGTCTCTGACTTCTTTCCC
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTTAAGTGACATCTACATAAGTTT
TGCTTTGTCACTACTCTTTATGGACAGATAATTCCTTGGCCCCTTTCTTT
ACAGTCACAGTATTAGCTGGGTGAGGTCTGATCTGAGGGCAGCAGCCCTT
TTATCCCATTTCCCTGATCTCTTTTAACACAGGCTTTGGTACCAACACTG
CATTTCCTGGTCTCCTTTGGCTCTCCAACTACAGTTTACTTTTCTTTTTG
CCCCACTTGCTCTTTTTCTTTGTAGACCAGCCTGAGTGATCACTAATTAC
ACATGACAGATTCTACATGAGACCGCCTTCAAATCTCCTCTGCCCACAAA
ATTATCCAAAATTTAGCCTCAGACAGATTCTTAGGACAAGGGCAAAAAGC
AGCCACATTATTTGCCAAAATGTTACAAGAATGGCCTGTATCCAAGTTGC
TAGTATTGTTTCCCTGTTCAGCTGGGTCTCCATAGTCCACACTGCTCTCA
GCCCTTCTGTCTTCCAAACTCCTGCCATAATGGCCCCACTTACAGCATTC
AACTACTTTCCTAGTCCATAGTCCCAACACCTCCCACAATCCTTCAAAAA
CCAACATGGCCAGCCCTGTCACAACAATGACCTGGTGCCCAGTGCCCGGT
ACCAACTTCTGTCTCAGTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_c04.b1 MSMg01no181_c04.b1 CHROMAT_FILE:
MSMg01no181_c04.b1 PHD_FILE: MSMg01no181_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:32 2005
         (676 letters)



>mm_chr14_22437735_22438810
          Length = 1076

 Score = 1239 bits (641), Expect = 0.0
 Identities = 665/673 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaccaggtctcacacagctaggcacgtgctctaccacgcacctgcactcccag 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ggaattccaccaggcctcacacagctaggcacgtgctctaccacgcacctgcactcccag 817

                                                                       
Query: 64  ctcatttttaatatgcttggaaagttcaccttttggcattctggaaagtggtgggtcaca 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ctcatttttaatatggttggaaagttcaccttttggcattctggaaagtggtgggtcaca 757

                                                                       
Query: 124 gcactccatatggaatcctctatcacaggaatcacaaaaaagcatgttatcctgtaatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gcactccatatggaatcctctatcacaggaatcacaaaaaagcatgttatcctgtaatac 697

                                                                       
Query: 184 aacagattagagactagttgagactaagaccagctgaagaacatcaacacccaagttacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aacagattagagactagttgagactaagaccagctgaagaacatcaacacccaagttacc 637

                                                                       
Query: 244 aggttaactaagatgtaataaaggagccacagtttcccagtgtggtgcaccattaccaat 303
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 636 aggttaactaagatgtaataaaggagccacagtttcccagtgtggtgcgccattaccaat 577

                                                                       
Query: 304 gtttaaacactgcaacattgtgttggaggaagagcccccctccatcaccgccctggcgct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gtttaaacactgcaacattgtgttggaggaagagcccccctccatcaccgccctggcgct 517

                                                                       
Query: 364 gggatgtgaggagcgtactcactgcatttttgccctggactcgacatgcgctgcacgtct 423
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gggatgtgaggcgcgtactcactgcatttttgccctggactcgacatgcgctgcacgtct 457

                                                                       
Query: 424 tgcactcgatgcactgccacctcaaggccttcacatttgcggttaactcaggacaaaact 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgcactcgatgcactgccacctcaaggccttcacatttgcggttaactcaggacaaaact 397

                                                                       
Query: 484 tcagacaggatgggtgtcctgcaatacaaagcaattgctctgtcagtaaacagtgcctta 543
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 396 tcagacaggatgggtgtcctgcaatacaaagcaattgctctgtcaataaatagtgcctta 337

                                                                       
Query: 544 gtttataaagccctcattgccttcattcaatggatgccactgaggccgaccagtgagcct 603
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtttataaaaccctcattgccttcattcaatggatgccactgaggccgaccagtgagcct 277

                                                                       
Query: 604 tatgaactcgagaacaaaaccagctgtagctgcacgggcttactttctcttctttgtctc 663
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 taggaactcgagaacaaaaccagctgtagctgcacgggcttactttctcttctttgtctc 217

                        
Query: 664 tgacttctttccc 676
           |||||||||||||
Sbjct: 216 tgacttctttccc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)