Query= MSMg01no181_c17.b1 MSMg01no181_c17.b1 CHROMAT_FILE:
MSMg01no181_c17.b1 PHD_FILE: MSMg01no181_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:35 2005
(508 letters)
>mm_chr14_116490083_116490991
Length = 909
Score = 938 bits (485), Expect = 0.0
Identities = 499/507 (98%), Gaps = 7/507 (1%)
Strand = Plus / Minus
Query: 6 gaattctttcctg----tttcaagctatgaaggggcagagaatcccagggaattgtcatc 61
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaattctttcctggcac---caagctatgaaggggcagagaatcccagggaattgtcatc 653
Query: 62 tcctggctagtgcacagccttcatatatgcacagctttcctctgataattcctctcccag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tcctggctagtgcacagccttcatatatgcacagctttcctctgataattcctctcccag 593
Query: 122 cttcactgaatcttcagcttcccgtctagaattttcaagtacaaaatgtctcatttccag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cttcactgaatcttcagcttcccgtctagaattttcaagtacaaaatgtctcatttccag 533
Query: 182 ttgtgttagcacaaactggttcagaaaaaactagaaaaggaatattgttttatgccagca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttgtgttagcacaaactggttcagaaaaaactagaaaaggaatattgttttatgccagca 473
Query: 242 ccttcggggtattgttttgtcacatagtgactggcagctggctcacactgtgtttggcta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ccttcggggtattgttttgtcacatagtgactggcagctggctcacactgtgtttggcta 413
Query: 302 gttgttcttttcttagcctaactaccatgtatgatatgggatatggactggaggaccccc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gttgttcttttcttagcctaactaccatgtatgatatgggatatggactggaggaccccc 353
Query: 362 ccccctgctacaaaggattaaaaatggacattcttattttccatgctaacgggtcctgag 421
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ccccccgctacaaaggattaaaaatggacattcttattttccatgctaacgggtcctgag 293
Query: 422 gtatattactggtttaagcacatttttaatgccttcctgcctacttattgaaatataaat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gtatattactggtttaagcacatttttaatgccttcctgcctacttattgaaatataaat 233
Query: 482 atattcattaaaagagctcctttttct 508
|||||||||||||||||||||||||||
Sbjct: 232 atattcattaaaagagctcctttttct 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space: 447702
Effective search space used: 447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_c17.g1 MSMg01no181_c17.g1 CHROMAT_FILE:
MSMg01no181_c17.g1 PHD_FILE: MSMg01no181_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:35 2005
(616 letters)
>mm_chr14_116335187_116336202
Length = 1016
Score = 1160 bits (600), Expect = 0.0
Identities = 612/616 (99%)
Strand = Plus / Plus
Query: 1 cattcctattaattgagatccattatagctgtgataatggagctgaacagaaaccatgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcctattaattgagatccattatagctgtgataatggagctgaacagaaaccatgac 260
Query: 61 aaatactaaagtacttaatttttcaaaattactggaccattagatttcaaatagcttcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatactaaagtacttaatttttcaaaattactggaccattagatttcaaatagcttcac 320
Query: 121 aaacagaaaaccatgtggaggtatggatttattaattgggcccacttaatcattccacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacagaaaaccatgtggaggtatggatttattaattgggcccacttaatcattccacat 380
Query: 181 tgtaagtaaacatcaaatactacacagtactccataaagatatacagtcaatagacaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaagtaaacatcaaatactacacagtactccataaagatatacagtcaatagacaact 440
Query: 241 gaaagaactaaaattgatctaagccagagacaaaatgtgttgtagtgatatttaaactta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagaactaaaattgatctaagccagagacaaaatgtgttgtagtgatatttaaactta 500
Query: 301 ttgtaaacataacatataattcttctccaaagttaatagcatattaatataaggtaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtaaacataacatataattcttctccaaagttaatagcatattaatataaggtaaaaa 560
Query: 361 gaagattcctaatttcttaaaaacataaagatatactttgtttgaaattatttttcattt 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 gaagattcctaatttcttaaaaacataaagatatacttggtttgaaattatttttcattt 620
Query: 421 actagcattgccataaaattatattctaatcctaatagtgaataaaatactaatcataga 480
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actagcattaccataaaattatattctaatcctaatagtgaataaaatactaatcatagg 680
Query: 481 aaataaaataaatggaatattttgtatgctaacatgagtatagtacaaaaatttgttttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaataaaataaatggaatattttgtatgctaacatgagtatagtacaaaaatttgttttc 740
Query: 541 ttttccttttcttttcatttctcttcttttctctctttcacttcctttgttattagatgc 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttccttttcttttcatttcttttcttttctctctttcacttcctttgttattagatgc 800
Query: 601 tgggtacctatctgtc 616
||||||||||||||||
Sbjct: 801 tgggtacctatctgtc 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
