BAC Information

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BAC

Clone NameMSMg01-181D24
Chromosome14 (Build37)
Map Location 81,435,867 - 81,436,468
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181D24.T7 (MSMg01no181_d24.b1)MSMg01-181D24.TJ (MSMg01no181_d24.g1)
ACCAG374484AG374485
length739737
length of high quality
(start - end)
604 (77 - 680)677 (47 - 723)
definitionCHROMAT_FILE: MSMg01no181_d24.b1 PHD_FILE: MSMg01no181_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:40 2005CHROMAT_FILE: MSMg01no181_d24.g1 PHD_FILE: MSMg01no181_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTATGGGATATTTAAACTCCCTG
GTTAATCAAGGAATAACACCCATTAGTGAAGAATCTAATGCTTCTAACTA
ATAATATTGACTGTTGCTTCAGATTAGAGAATATAAAAACTGCTAAATTA
ATCACCAATACTATTTCCACACAGAAGCAAGAAAACATGCTTACCATAAC
CCAGAAGTATATTCTAGGGATGTGAGCAGAAGCATAAATTCAGAAGGACT
ATATCTTCTTCCTGGTAAAATGTCTCAGCTACTTAATTTTTATCTGGGCA
ATGATGCAAAACTAAGGCACTGGTCAGCTCCAGTGCTTACAGAGCCACTG
CAGAAGAAATCTTTATCTCCTATACCTGGGCCTGGCCTCAGATTCTTTAT
TTAAGAGGCACCAGACATTCTGTGTAAATGTTGATTATAAGCTAAACTTT
GGCAGTTATTTTGGGTAAAGAAGATGAAGGTTTGGAACAGACCGGATGAC
TTTAATGAATATCTAAACTTCTAGTAGGAATATGGGAGCTGACAGCAGCA
AAATTACAGAATCGGAGAAGCCAGAAACATTAAAGTGGTACTGGATGACA
TCCTTAGGATCAAGATTTGAAAGGATGGTATGGAATTTTCTGCATATCCA
ATCAGTCATCAAGCCATATTGCAAGTGAATTTACCTCCN
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATTGAATATCCCACTTTTTTTTTTCCAGAAGGTCTCAGTGAAT
CAAAGATAGACTGTGGGACCGAGAAAGGTAGCTTGGTCCCAGGTTGAGAT
TAGGCTCAAAGCCCTGGAGACCCTGAAGGGATGGTAGGTGCTTTGCCTGT
CCCCTGGCACCAATCCGCCGTCACTAGCCGCAACCCCCCATAGATTTGTG
GTCATTTTTCATGTAAGGGCAATGCCTCAAGCCCTTCCACTTATAGAGGA
TGTGACCTGTGGTCAAGTAGGCTCAAGACAGAGCTCCATTTTAATGAGGC
ACCTAAAGGCCTGGAGGTGCATATAATCTTAGCCAATAAACTTTCCTTCC
CAGACATTCCTCCCTGCAAAAGGTATATCTCAGGCTCACCCTGAGAAGTG
GCGTTTGGTTTTATTCATCCTATTTATGCCATGACAATAAATGCCTTAAA
ACCATGGACTACCTCTTTTCATTGGAATCCACTCTGGGGAGCCATGGAGA
AGGCCTTCACCTACAGAACTTCCTTCTAATCTCTCATAGAAGGTCTCTCT
GTGCTCCCAGCCATGGCAGCCATCAAGCTCAAGCCCTCCACCATCCTCAA
GCCAAGAACTCTCTCTATGAGGAAACAGCTGAAGCTCTCCTCTCCCTCCC
CATGCACCGGGCTAGATCCAGCCAAGGGGCCCCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_d24.b1 MSMg01no181_d24.b1 CHROMAT_FILE:
MSMg01no181_d24.b1 PHD_FILE: MSMg01no181_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:40 2005
         (604 letters)



>mm_chr14_81435667_81436670
          Length = 1004

 Score = 1141 bits (590), Expect = 0.0
 Identities = 599/602 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctatgggatatttaaactccctggttaatcaaggaataacacccattagtgaagaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cctatgggatatttaaactccctggttaatcaaggaataacacccattagtgaagaatct 743

                                                                       
Query: 61  aatgcttctaactaataatattgactgttgcttcagattagagaatataaaaactgctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aatgcttctaactaataatattgactgttgcttcagattagagaatataaaaactgctaa 683

                                                                       
Query: 121 attaatcaccaatactatttccacacagaagcaagaaaacatgcttaccataacccagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 attaatcaccaatactatttccacacagaagcaagaaaacatgcttaccataacccagaa 623

                                                                       
Query: 181 gtatattctagggatgtgagcagaagcataaattcagaaggactatatcttcttcctggt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 622 gtatattctagggatgtgagcagaagcataaattcagaaggaatatatcttcttcctggt 563

                                                                       
Query: 241 aaaatgtctcagctacttaatttttatctgggcaatgatgcaaaactaaggcactggtca 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 562 aaaatgtctcagctacttaatttttatctgagcaatgatgcaaaactaaggcactggtca 503

                                                                       
Query: 301 gctccagtgcttacagagccactgcagaagaaatctttatctcctatacctgggcctggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gctccagtgcttacagagccactgcagaagaaatctttatctcctatacctgggcctggc 443

                                                                       
Query: 361 ctcagattctttatttaagaggcaccagacattctgtgtaaatgttgattataagctaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctcagattctttatttaagaggcaccagacattctgtgtaaatgttgattataagctaaa 383

                                                                       
Query: 421 ctttggcagttattttgggtaaagaagatgaaggtttggaacagaccggatgactttaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctttggcagttattttgggtaaagaagatgaaggtttggaacagaccggatgactttaat 323

                                                                       
Query: 481 gaatatctaaacttctagtaggaatatgggagctgacagcagcaaaattacagaatcgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaatatctaaacttctagtaggaatatgggagctgacagcagcaaaattacagaatcgga 263

                                                                       
Query: 541 gaagccagaaacattaaagtggtactggatgacatccttaggatcaagatttgaaaggat 600
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaagccagaaacattaaagtggcactggatgacatccttaggatcaagatttgaaaggat 203

             
Query: 601 gg 602
           ||
Sbjct: 202 gg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)