BAC Information

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BAC

Clone NameMSMg01-181M19
Chromosome14 (Build37)
Map Location 28,195,722 - 28,195,826
singlet/doubletsinglet
Overlap geneArhgef3
Upstream gene4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, LOC100040147
Downstream geneCcdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181M19.T7 (MSMg01no181_m19.b1)MSMg01-181M19.TJ (MSMg01no181_m19.g1)
ACCAG374866AG374867
length738853
length of high quality
(start - end)
501 (38 - 538)109 (68 - 176)
definitionCHROMAT_FILE: MSMg01no181_m19.b1 PHD_FILE: MSMg01no181_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:21 2005CHROMAT_FILE: MSMg01no181_m19.g1 PHD_FILE: MSMg01no181_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCA
TGGCTTGATCCGAGCCCAAAGTGTTTCTCTAACTATCCCTAGGTATATGT
CTAGAGGCTTTTAGCCTCCATAAAATCTAATCTGCAAACCAGATCTTGCA
GGCTTCAACTTCCAGCCTCTGTCTGCTAATTTAAGCCTAGACTGTTTCAG
CCGCTGAGAGTTACTGCTGAATAAACTCACTCTTTCTGAACTCTCTCTGG
CTGGTTCAACTCAGGTGTTATGGCCCAAAATTCTCTCCAAGGTGACTGAT
TCAAAGCAGCTTCTCTCGGGTTCTCAGTGAATTGCTCTGCCTGGCCTCAT
ACTAACTTTGGCAATATATCCTGATTCCAATATTAGAATATATTCTAATT
CTCTAGCTCCTTCTCATTATCTGCCTCATTCTATCTTCACCTGTTTCCAG
CTTGTTCTCTCTGCAACCTGTTTCTGTAAAACTGTCCTGGTAAAACTGCC
ACTCATACCACCTTTTTCTCCCTGCAGTCCTCTTTTTTTGTTGTTGTTCT
GCTTTGATCTCTGCCTTTCCATTCTACCATTTCCATTAACCATTACTATT
TTTTTTTCTACCTTTATCTATTTATTTTCTCTCTCTTCTTTCCCCCACTT
ATTTCTTCTTTCACTTTCTTTTTTCCCCTCTTCCACTTCACATTTGCCTT
TTTCCCTTTTCTTTCTTTCTCCCTTTTTTTCTTTCTCN
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCCGCAATTCTTGTTTGCAGTGCAGAGGAAAGTACTCATGG
CGGGTGGTAGAAGTGACCTCTGTTGTGAAAATGGAGGAGGAAAAACAGAA
TTAGGGGGTGGAGAGAGGAGAGTGCGCTCCTTCTCCCCCCCCTTTCTCTC
CCCTTCCCCTCCCCCCTTCCCTCCCCCTCCCCTCCTCCCCCCCCCCTTCC
CCTTCTTCCCCCCCTCCTCCTTCCTCCCTCCCTCCCCCTCCCCTCTCCCT
CCCCCTCCCTCTCCCCCCTCTCCTCCCCTTTTTTTTTTTCCCCCCCCCCT
CCCTCCCTTCCCTTCCCCTTTTTTTTTTTCCCTCCTTCCCCCCCCCCCTC
CTCTTTCTCTTTCTTCCTCTCCTTTTCTTCTTTTTTCCCTTCCCCCCCCC
CTTTTTTTTTCCTCCCCCTCTCTCCCCTTCCCCCCCCCCCCTTCTCTTTT
CCCTCCCCTCTCCCTTTTTCTTCCCTCTCTCCCCCTCCCCCCCCTTTTTT
CCCCCCTTCCCCCTCTCTCCCCCTTTTCTCCCTCTCCCCCTCTTCCTTTT
CCTCCTCCCTTCTCCCCCTCCTTTCTCTCCCTTCCCCTCCCTCCTCTCCT
TTCCTCCTCCCCTCCCCCTCCTTCTCCCCCCCTTCCCCTCTTTCCTTCCC
CCTTTCTCCCTTTCCCCCTTTCTTTTCCCCTTTCCTTCCTCTTCTCTCCC
CTTCCCTCTCTTCCTTCCCTCTCCTCTCCTTTCCCTCGTTCCCCCCTTCT
CTTTTCTCCCTCCCCCCCCTCCTCTCCCTCCTCTCCTCCTCCCTCTCCCT
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_m19.g1 MSMg01no181_m19.g1 CHROMAT_FILE:
MSMg01no181_m19.g1 PHD_FILE: MSMg01no181_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:21 2005
         (109 letters)



>mm_chr14_28195520_28196028
          Length = 509

 Score =  195 bits (101), Expect = 5e-55
 Identities = 104/105 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   ttgtttgcagtgcagaggaaagtactcatggcgggtggtagaagtgacctctgttgtgaa 62
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 203 ttgtttgcagtgcagaggaaagtactcatggcgggtggtagaagtgacctgtgttgtgaa 262

                                                        
Query: 63  aatggaggaggaaaaacagaattagggggtggagagaggagagtg 107
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatggaggaggaaaaacagaattagggggtggagagaggagagtg 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)