BAC Information

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BAC

Clone NameMSMg01-182I01
Chromosome14 (Build37)
Map Location 97,391,560 - 97,392,235
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182I01.T7 (MSMg01no182_i01.b1)MSMg01-182I01.TJ (MSMg01no182_i01.g1)
ACCAG375365AG375366
length725695
length of high quality
(start - end)
680 (46 - 725)477 (83 - 559)
definitionCHROMAT_FILE: MSMg01no182_i01.b1 PHD_FILE: MSMg01no182_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:15 2005CHROMAT_FILE: MSMg01no182_i01.g1 PHD_FILE: MSMg01no182_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTAGTCCGTGCCATAAGAGCTGTGCTTTATCCCAATATGCATTT
CTACTGAAAAACAAATAACCCATTTTATGGAAGGCTAATGACAGGTCTTT
CCTTAATGTTTATGATAATGAGGAGGAATTCTTAGTGTGTTTTTAATACA
TTCTTTTCAATAGAAGTAAGGTTCCTGATCAACTTTCTTATGATAACTTT
AGAATTTCATAACAACATGCGATTGAAAACAAAATCAAATCATCAAAAAT
GCATTTGTGCACTACTTTCTGTATACAAATCTCCCCCTGAAAACTTTCTA
ATATTACTTTAAGTAAATATATTTTAAAAACATTCTTGTGAGAAATTTTG
TTAAATTATGTTAACCGAGGAGAGTGGCACATGTTACTACTATTTCTCAT
CTCCTAAAGGCATTTGTAGAATCTCATTCTGAGGAAAAGTTGTTCTTGTC
ACTGCTATCCCAGATGAAAATGTCCCCAGGCCTTTGAACTGTTTGTAAAC
CACTGCAGAGAGGAAAATATTATTAGGGGACACAAAATGGCTAGGTGGTT
GTCCAGAAAGAGAGTGTTCAATATTCACTTAAATGTGAAAATCTGAGCAG
CAATCAGCTCAGTACATTTATTGGGTAATTATTATTTTCTTTACTTCCCA
GATGAGATAACTAAGATGCTATGAG
NCGATGCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAGGCAGTTCCTCAA
AAAATTGGAAAAAGATCTACCTGAAAAAACAGCTATACTACTTTTGGGCA
TATATTCAAATGATGGCTCACCATGACACAAGAGCACATTCTAATAGTGT
CCTTTTTTGTAATAGCCAAAAGCTGGAAACAACCCATATGTCCCTCAACT
GAAGAATAAATATAGAAAATGTGTTTTATTTATACCATGGAATACTATTC
ATCTATTAAGAACAAGGAAATCATGAGTTTTGTAGAGAAATGGATGGGAT
AACCCAGTACCAAAATGATATGCATGGCATATACTCACTGATAAATGCAT
ATTAGCCAAAATGAACAGAATACTAGGATACAACCAAGTGAGGATGCTTC
AATCCTAGTTAAGAGTGGGAAGAAAATAATCATGAGAGTGAGAGATGGGC
ATGGGTCTGAGAGGGGGAGAAGGAGAAAAGGGGAACAGGATCAGGTATGA
GGGGTTCACAGGAAAGAAGACCAGAGGTCCAGAAGAATGAATGCAAATTG
GCCGCCTCAGGTCATTGTTAAATGTAAGCCACATATAGAATGAAATTTTA
ATCTCCCCCGCTTATTTATTCCCCCTACTCTTTTCCCGTGACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_i01.b1 MSMg01no182_i01.b1 CHROMAT_FILE:
MSMg01no182_i01.b1 PHD_FILE: MSMg01no182_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:15 2005
         (680 letters)



>mm_chr14_97391356_97392435
          Length = 1080

 Score = 1292 bits (668), Expect = 0.0
 Identities = 674/676 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctagtccgtgccataagagctgtgctttatcccaatatgcatttctactgaaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctagtccgtgtcataagagctgtgctttatcccaatatgcatttctactgaaa 264

                                                                       
Query: 65  aacaaataacccattttatggaaggctaatgacaggtctttccttaatgtttatgataat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacaaataacccattttatggaaggctaatgacaggtctttccttaatgtttatgataat 324

                                                                       
Query: 125 gaggaggaattcttagtgtgtttttaatacattcttttcaatagaagtaaggttcctgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaggaggaattcttagtgtgtttttaatacattcttttcaatagaagtaaggttcctgat 384

                                                                       
Query: 185 caactttcttatgataactttagaatttcataacaacatgcgattgaaaacaaaatcaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caactttcttatgataactttagaatttcataacaacatgcgattgaaaacaaaatcaaa 444

                                                                       
Query: 245 tcatcaaaaatgcatttgtgcactactttctgtatacaaatctccccctgaaaactttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatcaaaaatgcatttgtgcactactttctgtatacaaatctccccctgaaaactttct 504

                                                                       
Query: 305 aatattactttaagtaaatatattttaaaaacattcttgtgagaaattttgttaaattat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatattactttaagtaaatatattttaaaaacattcttgtgagaaattttgttaaattat 564

                                                                       
Query: 365 gttaaccgaggagagtggcacatgttactactatttctcatctcctaaaggcatttgtag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttaaccgaggagagtggcacatgttactactatttctcatctcctaaaggcatttgtag 624

                                                                       
Query: 425 aatctcattctgaggaaaagttgttcttgtcactgctatcccagatgaaaatgtccccag 484
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 aatctcattctgaggaaaagttgttctggtcactgctatcccagatgaaaatgtccccag 684

                                                                       
Query: 485 gcctttgaactgtttgtaaaccactgcagagaggaaaatattattaggggacacaaaatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcctttgaactgtttgtaaaccactgcagagaggaaaatattattaggggacacaaaatg 744

                                                                       
Query: 545 gctaggtggttgtccagaaagagagtgttcaatattcacttaaatgtgaaaatctgagca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gctaggtggttgtccagaaagagagtgttcaatattcacttaaatgtgaaaatctgagca 804

                                                                       
Query: 605 gcaatcagctcagtacatttattgggtaattattattttctttacttcccagatgagata 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcaatcagctcagtacatttattgggtaattattattttctttacttcccagatgagata 864

                           
Query: 665 actaagatgctatgag 680
           ||||||||||||||||
Sbjct: 865 actaagatgctatgag 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)