BAC Information

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BAC

Clone NameMSMg01-182K11
Chromosome14 (Build37)
Map Location 85,376,543 - 85,485,320
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182K11.T7 (MSMg01no182_k11.b1)MSMg01-182K11.TJ (MSMg01no182_k11.g1)
ACCAG375472AG375473
length740705
length of high quality
(start - end)
369 (44 - 412)559 (81 - 639)
definitionCHROMAT_FILE: MSMg01no182_k11.b1 PHD_FILE: MSMg01no182_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:27 2005CHROMAT_FILE: MSMg01no182_k11.g1 PHD_FILE: MSMg01no182_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,484,956 - 85,485,320)(85,376,543 - 85,377,100)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGTATTATTCCCAATGTCTCTTCCATAATAGTATTCATCTACTTAC
TGTAGAAAAGAACATTTGTCTACCGTGAATATTTTCCATCAGGCTTTAGG
TCTGCAAAGTAGCTTTGTAAATAATTATAAGCTATAATTACTAATTAGAT
TTCACTTCTGTTTCTTTACTCTAAGTAGATTCCTTAATCCCCATTTTCTC
AGTGGAAATCTAAAATGCCAAAGTGATTTTCCCCCAAGGTTTACTTTTAT
TAATAATAAATCAGAGATAAAGCTCACAATTAAAGAATAACTTCCATACT
TATACTCAGTGCAAAATACAATATAATTAGGTATACATATATAAATTTAT
ATTTCTCCTTTCGACCCCCCCACTTCTATTCTTTTGTTAGNCAGATTTCT
CTAGAGGAACAAACGTTATTGAATAAATCTATATGTAATAAGAGGGAATT
TATTAGAGTGCCTTTATTGGTTATGCTCTGGTTAGTTAAATAATGTATAT
TTTACCCTGGGAACTTTTTTAACCTAAATTTTCTTCCCTGCCGGTTTATA
CCCCCTCCGCCCTCCTTTGAATTTCGTTAATTTCCTTTTTTCCCCTTTAC
ACATTTTCCCCCCTCTCTTCTTTTTTCCCCCCAGTTTTGTTTTTTCCCCC
CATATTTGCCTAATCCTTTTTTTTTCTTTCTTCCTATCCC
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCATGAAAGGAAGCAGCA
AAATCACATTACATCCACAAAAGTAGAAGCAAGATTACAGACCTTCAAAT
TTTTCCCATGGGATCTACCTTCAGGAAGGTTCCACACCACTAGAAGTTCC
ATATCCTTCTCAAACAGCTCTACCAAGAGGGAACTATGTGTTCAAATGTA
ATAAGCCTATGGCAGACATTTCTCGTTTAAACCACCACATAAACTTATTA
CCTGAGGAATATCTAGCTCTGATTTGCATTTTAAAAGTATCATTCTTTTG
ACAATAAATGTAATATAAACTAATTCAAAGGAGAAGAACTAGAGATACTG
AGTTTATTGTATTGCCCACATGAAAATGTATTTTTTTGTTCTGAATAACA
AAATTTCACAAGTGTACATGCTAACAGAGCAAATATACGGAGAGCAAGCA
GAGAAGGATCAAAGATGACTTAAGGTTTTGGAATTAGAATTTAGATGCCT
CTATTAGCAGAAGAATGTTAGCAGTGAAGACTGAATGAAACGAAGACAGT
GACTAGCACTCAATCACTTTCTGAACATTATTGGTATACAGTTTGCAGGA
AGAAACAGAAGCATATAGGATTTTTAGTTGTTTAAACAAATAGATTATCG
GGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_k11.b1 MSMg01no182_k11.b1 CHROMAT_FILE:
MSMg01no182_k11.b1 PHD_FILE: MSMg01no182_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:27 2005
         (369 letters)



>mm_chr14_85484752_85485520
          Length = 769

 Score =  652 bits (337), Expect = 0.0
 Identities = 358/365 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagtattattcccaatgtctcttccataatagtattcatctacttactgtagaa 64
           ||||||||||||||| |  | |||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattcaagtattatacttactgtctcttccataatagtattcatctacttactgtagaa 510

                                                                       
Query: 65  aagaacatttgtctaccgtgaatattttccatcaggctttaggtctgcaaagtagctttg 124
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aagaacatttgtctacagtgtatattttccatcaggctttaggtctgcaaagtagctttg 450

                                                                       
Query: 125 taaataattataagctataattactaattagatttcacttctgtttctttactctaagta 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 449 taaataattataagctataattactaattaggtttcacttctgtttctttactctaagta 390

                                                                       
Query: 185 gattccttaatccccattttctcagtggaaatctaaaatgccaaagtgattttcccccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gattccttaatccccattttctcagtggaaatctaaaatgccaaagtgattttcccccaa 330

                                                                       
Query: 245 ggtttacttttattaataataaatcagagataaagctcacaattaaagaataacttccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggtttacttttattaataataaatcagagataaagctcacaattaaagaataacttccat 270

                                                                       
Query: 305 acttatactcagtgcaaaatacaatataattaggtatacatatataaatttatatttctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acttatactcagtgcaaaatacaatataattaggtatacatatataaatttatatttctc 210

                
Query: 365 ctttc 369
           |||||
Sbjct: 209 ctttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no182_k11.g1 MSMg01no182_k11.g1 CHROMAT_FILE:
MSMg01no182_k11.g1 PHD_FILE: MSMg01no182_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:27 2005
         (559 letters)



>mm_chr14_85376342_85377300
          Length = 959

 Score = 1042 bits (539), Expect = 0.0
 Identities = 554/559 (99%), Gaps = 1/559 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcatgaaaggaagcagcaaaatcacattacatccacaaaagtagaagcaagattacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tggcatgaaaggaagcagcaaaatcacattacatccacaaaagtagaagcaagattacag 261

                                                                       
Query: 61  accttcaaatttttcccatgggatctaccttcaggaaggttccacaccactagaagttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 accttcaaatttttcccatgggatctaccttcaggaaggttccacaccactagaagttcc 321

                                                                       
Query: 121 atatccttctcaaacagctctaccaagagggaactatgtgttcaaatgtaataagcctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atatccttctcaaacagctctaccaagagggaactatgtgttcaaatgtaataagcctat 381

                                                                       
Query: 181 ggcagacatttctcgtttaaaccaccacataaacttattacctgaggaatatctagctct 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggcagacatttctcgtt-aaaccaccacataaacttattacctgaggaatatctagctct 440

                                                                       
Query: 241 gatttgcattttaaaagtatcattcttttgacaataaatgtaatataaactaattcaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatttgcattttaaaagtatcattcttttgacaataaatgtaatataaactaattcaaag 500

                                                                       
Query: 301 gagaagaactagagatactgagtttattgtattgcccacatgaaaatgtatttttttgtt 360
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 501 gagaagaactagagatactgagtttattgtattgtccagatgaaaatgtatttttttgtt 560

                                                                       
Query: 361 ctgaataacaaaatttcacaagtgtacatgctaacagagcaaatatacggagagcaagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaataacaaaatttcacaagtgtacatgctaacagagcaaatatacggagagcaagca 620

                                                                       
Query: 421 gagaaggatcaaagatgacttaaggttttggaattagaatttagatgcctctattagcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagaaggatcaaagatgacttaaggttttggaattagaatttagatgcctctattagcag 680

                                                                       
Query: 481 aagaatgttagcagtgaagactgaatgaaacgaagacagtgactagcactcaatcacttt 540
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 681 aagaatgttagcagtgaagacttaatgaaacgaagacagtgactaccactcaatcacttt 740

                              
Query: 541 ctgaacattattggtatac 559
           |||||||||||||||||||
Sbjct: 741 ctgaacattattggtatac 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)