BAC Information

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BAC

Clone NameMSMg01-182M05
Chromosome14 (Build37)
Map Location 48,579,028 - 48,579,392
singlet/doubletsinglet
Overlap genenone
Upstream geneSamd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik
Downstream geneMap1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182M05.T7 (MSMg01no182_m05.b1)MSMg01-182M05.TJ (MSMg01no182_m05.g1)
ACCAG375552AG375553
length726753
length of high quality
(start - end)
369 (46 - 414)179 (78 - 256)
definitionCHROMAT_FILE: MSMg01no182_m05.b1 PHD_FILE: MSMg01no182_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:36 2005CHROMAT_FILE: MSMg01no182_m05.g1 PHD_FILE: MSMg01no182_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGACTACTTCTTGAAGCCTTTCTCATGGAGAGGCTCAGAATCCA
TAGAACATATTGTTGCTCACTGCTCATGAAAATGTTGGTGACCTTTCAAC
TCCTCCTTGGAGACAGCTTGTTCCCGATAGGTCTTTTGGAAAAGAGCTCC
TTCTAAGGGCAAAGTTATAACTGGAACGAATGGGAAAGTTAAAAGAAAAG
TCCAACACTGACCTTGGCTTGCAGAAAAACAAGAACCTTTGTCCTGGATC
TTTTCTGTGAGGGAAACGTGATGGCCTCCATCACGCTCCTTCACAAGAAA
ACGTTAAAGTTGAACAAATAAACAGTGCTGCCTGAAGCATTATTTATGGT
GGAACATTTTGTCACCCCCCAACATGTTGGCTAATCTGCTTTGGCTAAGT
TCCCCTTAGAGACTGTGGTTAATAGAAGGACTGGGCAGGAAATTAGCATA
CTCATTGCTATTCAGAAAAAGGGGTAAAATGCTAATGGGGTTACCTCCAT
GACAGCTTCTCTTTATTTCTCTGAAAGCTAACTAATGTTTGCGCCCATCC
CCACCAGGAATCTGCTTCCAATTCCTTCTCCTACAGTTACAATGTACCCG
CCTGGGTTTTACTCTCCAACAATATTCGACTTCCCCTCCCAGAGCCGCCA
TTTGTGTCCTCCCATGTATTGACACG
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGATGCCAAAATGTAGTGGCTT
TAAATAAAGTCAATGTATGCACTTGTCTGCAGGGTGGGGATGTGGACTTA
ACTTGGTTGCGTGGTTCTTCTCTCAACTTTTTGCCAGCTCAGGCATTTGT
GGTTGGCTACTGGTCACTGANGACAGGATGGTCCCATATGTTCTTACACT
TCCAGGCCCATANCATAATGGCCCCTCTTCATACCTGGNTTCTACCCTCT
CCCAGTATGTTCCTCTTTTTTTCTTGTAATTTTTCCNNTTTTCNTGTNAC
CTTTCCCCCNNCCTTTATCCCTAAAAAAAACTCTCCCCNNTTNTTTAATG
TATTTTGGGTTGTCCCCCCCCCCCCCCCCCNNNNCCCCATTNAATCNNNN
NCTTTNNTNNNNNNNNNTTTNNNTTTTCCCCCACAAAAGTTTCTACCTTC
CTTTTTTGTGGGGGGGGGGGGGGGGGGGGGACCCCCCTTAACCTNNCTAA
CCCTGCGGTTTTTTTATTTGTGTGTTGCAGTTATCNNNNNNNNNNNNTTT
CTNTTTTCCCCTTTTTTTTTGTTCNGGGTTTTCTTTTCCCCCCTCCGCNC
CTCNTNTCCTCTTAAAAAATTTTCTTTTTTTTCTCCCCGCCCTTCTCATC
TCCCACCCCCNTTTCNTCTTTCCTTTTTCTCTTCTCCGGGGCGCGGGGCG
GTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_m05.b1 MSMg01no182_m05.b1 CHROMAT_FILE:
MSMg01no182_m05.b1 PHD_FILE: MSMg01no182_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:36 2005
         (369 letters)



>mm_chr14_48578824_48579592
          Length = 769

 Score =  698 bits (361), Expect = 0.0
 Identities = 364/365 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagactacttcttgaagcctttctcatggagaggctcagaatccatagaacata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagactacttcttgaagcctttctcatggagaggctcagaatccatagaacata 264

                                                                       
Query: 65  ttgttgctcactgctcatgaaaatgttggtgacctttcaactcctccttggagacagctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgttgctcactgctcatgaaaatgttggtgacctttcaactcctccttggagacagctt 324

                                                                       
Query: 125 gttcccgataggtcttttggaaaagagctccttctaagggcaaagttataactggaacga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttcccgataggtcttttggaaaagagctccttctaagggcaaagttataactggaacga 384

                                                                       
Query: 185 atgggaaagttaaaagaaaagtccaacactgaccttggcttgcagaaaaacaagaacctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgggaaagttaaaagaaaagtccaacactgaccttggcttgcagaaaaacaagaacctt 444

                                                                       
Query: 245 tgtcctggatcttttctgtgagggaaacgtgatggcctccatcacgctccttcacaagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtcctggatcttttctgtgagggaaacgtgatggcctccatcacgctccttcacaagaa 504

                                                                       
Query: 305 aacgttaaagttgaacaaataaacagtgctgcctgaagcattatttatggtggaacattt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 aacgttaaagttgaacaaataaacagtgctgcctgaagcattatttatgggggaacattt 564

                
Query: 365 tgtca 369
           |||||
Sbjct: 565 tgtca 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)