BAC Information

Click to search

BAC

Clone NameMSMg01-182M10
Chromosome14 (Build37)
Map Location 61,500,605 - 61,661,698
singlet/doubletdoublet
Overlap geneMipep, LOC100043586, Tnfrsf19
Upstream geneAtp8a2, LOC668162, LOC628768, Nupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9
Downstream geneSacs, Sgcg, Arl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182M10.T7 (MSMg01no182_m10.b1)MSMg01-182M10.TJ (MSMg01no182_m10.g1)
ACCAG375562AG375563
length730727
length of high quality
(start - end)		377 (31 - 407)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no182_m10.b1 PHD_FILE: MSMg01no182_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:37 2005CHROMAT_FILE: MSMg01no182_m10.g1 PHD_FILE: MSMg01no182_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,661,340 - 61,661,698)(61,500,605 - 61,500,890)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGGA
ATTCTTTTGTTCTCTTGGATTTTGTGGTGAAAATTTTTAACTTGACTCTT
GATTAAATTTTATACCTGTCTATTCCATTTATTGTTTTATTCTTTAATTC
ACTAATTATCAATGTAATACCAAGCAAGCATTCCAGTCACACAAATAGTA
GATTTTTAAAACTTTGTCTCATTTAAATGAACAACTAAGAAAATTGTTAT
TTCTCCATTTTATGCAGAGGAAAAGTGAGTCCAAGAGGAGTTGAATTACA
CGTCAGGGTCAGAAGGTTAGTTCAGTAGGGTGCAAATGTCTATCTAACCT
CAGATCTTAAATTCTTTGTTCTCGGGCAGGGCAGTCCTTTAGTAACAGAG
TTGATCTCCCCCCTCACCAAATACCGTTCCTAACATTTTTGCCAAAACAA
ACAAAACAAAATAGTTCCCCCCCCCTCCTTTTTTTTTCTTTCTTTCAACA
TACTTTGTAAGAATTATTGGTTGGCTTAGACTCTCCAGTTTTATAGCAGC
TCACAATAAACTTTTCTTCTAACATTAAACTGATTCTCAGCGTACCCCTT
ACTCTGGCTGTTCCATAACTTGCCCCTGAGACTTCTAGTGCAGAAAATGA
TTGGCCATTCCCAGGATTTCCGTGCTCTCTAAAAACAATTACATAATGTT
TCTATACTCCCCGCCCCCCTTTTCTCCCTG

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATATGTTTATTCCCTCTTTGTTGTTGC
TGTTCTGAGAAATTCAAAGCTTAAGTTAGAGATTTGGTTTGTTGATTATT
AGAACCTAACTAAAGCATCTTTTTATCAAAATGTTTTATTTTCCTGTACG
CTTGACAAATGTTAATTTATGGAAATCCTAATTGTAGATGGAAGTGACTG
TCATGGGTTTTCATGGAATGGTCTCACAAACATTTATAGGAAGATGTGCT
TCTTAATAGACACTCTCAGGATGTTGATATTTATAATTATAGCTAGCTAA
GCCTTTTGATTGTTTCATCCCCCCCCCCTAGGAAATGATTCCCAGTGTTG
GGGATATACTGCCCCACCCCCAAAAAAGAAAGAGTCCTGGTAGGCAGTTC
CAAAGTGTTTTCTCTCCTCTCTCTGTTGAATCCTCGCTCTTTGACCTTCC
TGTGCCCATAAGAAATGAGCGCTTCCTTGCGTTATATCGCCTGCTTCTTA
TCTCCACTCTTGCATTTCTTTTCCCCCCTTTCCCATTTCTCTTTCCCCCC
CCGGCTTTCCTTTCTCCCGCCATTTTCTTGTATTTTACCGCCTCATTCAC
CTTCCGCTGCCTTTTTGTCTTTTTCCTTTATCAGACTATTTCCTGTACCC
TCCGCTACTCTCCACCTATTAATTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_m10.b1 MSMg01no182_m10.b1 CHROMAT_FILE:
MSMg01no182_m10.b1 PHD_FILE: MSMg01no182_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:37 2005
         (377 letters)



>mm_chr14_61661316_61662092
          Length = 777

 Score =  663 bits (343), Expect = 0.0
 Identities = 355/359 (98%)
 Strand = Plus / Minus

                                                                       
Query: 19  gaattcttttgttctcttggattttgtggtgaaaatttttaacttgactcttgattaaat 78
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaattcttttgttttcttggattttgtggtgaaaatttttaacttgactcttgattaaat 324

                                                                       
Query: 79  tttatacctgtctattccatttattgttttattctttaattcactaattatcaatgtaat 138
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 tttatacctgtctatcccatttattgttttattctttatttcactaattatcaatgtaat 264

                                                                       
Query: 139 accaagcaagcattccagtcacacaaatagtagatttttaaaactttgtctcatttaaat 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 accaagcaagcattccagtcacacaaatagtagatttttaaaactttgtctcatttaaat 204

                                                                       
Query: 199 gaacaactaagaaaattgttatttctccattttatgcagaggaaaagtgagtccaagagg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaacaactaagaaaattgttatttctccattttatgcagaggaaaagtgagtccaagagg 144

                                                                       
Query: 259 agttgaattacacgtcagggtcagaaggttagttcagtagggtgcaaatgtctatctaac 318
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 143 agttgaattacacgtcagggtcagaaggttagttcagcagggtgcaaatgtctatctaac 84

                                                                      
Query: 319 ctcagatcttaaattctttgttctcgggcagggcagtcctttagtaacagagttgatct 377
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  ctcagatcttaaattctttgttctcgggcagggcagtcctttagtaacagagttgatct 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no182_m10.g1 MSMg01no182_m10.g1 CHROMAT_FILE:
MSMg01no182_m10.g1 PHD_FILE: MSMg01no182_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:37 2005
         (289 letters)



>mm_chr14_61500405_61501093
          Length = 689

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgtttattccctctttgttgttgctgttctgagaaattcaaagcttaagttagagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgtttattccctctttgttgttgctgttctgagaaattcaaagcttaagttagagat 260

                                                                       
Query: 61  ttggtttgttgattattagaacctaactaaagcatctttttatcaaaatgttttattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtttgttgattattagaacctaactaaagcatctttttatcaaaatgttttattttc 320

                                                                       
Query: 121 ctgtacgcttgacaaatgttaatttatggaaatcctaattgtagatggaagtgactgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 ctgtacgcttgacaaatgttaatttatggaaatcctaattgtagacggaagtgactgtca 380

                                                                       
Query: 181 tgggttttcatggaatggtctcacaaacatttataggaagatgtgcttcttaatagacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggttttcatggaatggtctcacaaacatttataggaagatgtgcttcttaatagacac 440

                                                         
Query: 241 tctcaggatgttgatatttataattatagctagctaagccttttga 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcaggatgttgatatttataattatagctagctaagccttttga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |