BAC Information

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BAC

Clone NameMSMg01-184B10
Chromosome14 (Build37)
Map Location 34,225,443 - 34,225,752
singlet/doubletsinglet
Overlap geneMapk8
Upstream geneChat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22
Downstream geneLOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184B10.T7 (MSMg01no184_b10.b1)MSMg01-184B10.TJ (MSMg01no184_b10.g1)
ACCAG376480AG376481
length758771
length of high quality
(start - end)
313 (61 - 373)285 (78 - 362)
definitionCHROMAT_FILE: MSMg01no184_b10.b1 PHD_FILE: MSMg01no184_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:18 2005CHROMAT_FILE: MSMg01no184_b10.g1 PHD_FILE: MSMg01no184_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTNNNNGCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCAAAGAATTTCTGGAGTGTGAGTTTTGCTGG
GGGAGAGGCTGGGAGTTTGTTAAAGCAATGATAACAAGAAACTGACACCC
AACTGAATTTCTTTTTTTAAAAGATGATTTATTTTTATTTTATGTGAATT
GGTGTTTTTCCGGCATGTGTGTCTATGTGAAGGTGTTGGATCTTCTAGAG
CTGCAATTATAGACAGTTGTGAGCTGCCATGAGGGTGCTTGGAATTGAAT
CTGGGTCCTGTGGAATAACAGCCAATGCTCTTATCTGCTGAGCCACCTCT
TCAGGCCTCCAACTGACAATTTCTTATGCCACCCCCCAACTCACTAAATA
TCATGGGCAGCCTGGGGCCATGTCATACCCCATGAAAGAATCATATGGAA
GGCCTGAAAGGTTGCAAGCTAAACACTGGCATTAGCCTGCAGAAGAAAGA
AGAACAGTGAGTGGAAGAGGAAAACTAGAGAAGCTACTGTACAGTTCACA
AAAGCTCACAATCAGCTCTGTTTGCTTTGGCTCTCCTCCGACGGCAGGTT
GATGAGTACCCCCTTCTGCTCGTTGCCCGACCTGTGTGCCCGATTAGTCG
TAAGCCTATGCCTTATTCTTGACCCACTCTCCTTTTCTATATTTCTCCAT
CCTTGTTATCATTCACCTCCTTAACCCTTTCTGGGCCTCCCACTTACTCA
GCACCACN
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTCTTGCAAGCACCAGGACC
TGAGTTTGAGCCTCAGAATTGACAGAGAAAAGTCAGGCACAGAGGCGCCT
GTTTTTGATCCCAGTGCTGGGGCAGGGGTGGAGGAGAGAGACAGATCCCT
GGGACTCACTGGCTCAATAACATTCTCCAATCAGCGGCCTCAGCTTGTCT
GTTGGAGATCTTATCTCAAAAGGAATGGTAGGCAGCTCCTGAGGGCAGAC
ACTTGAGCTGGTCCTCTGGCTTCCATATGTATGTACACACATGAGCATAC
ATACTCACATGTGTTTATTTCTCCTCTGCGCACACATACACACTCAAACA
CACACACACTGGTTCAGGCCCGGGGGTAGAAAATGGTATCTGCCGAAAGT
TTCTCACAGAGATTCTTATAAGGCTCTGGGGAACTATCTATTCGGACCTT
TTTTTTTGTTTCTGAATTGTTTGTATCCTGAAAACTCCTGATATGAGAGA
GTTTGAACTCTGATACCACATCGCTACTACCACGCATATGTTTGTTTTGA
TAGTACTAGTTTCACAAAATTGATCTCTCCAATAGATCTGTTATTATATT
TTTCTTTTTATTTAGCTTGGTTTGCTTATATTCCTTTTCATTATTTCATT
CTTTATCGTTAACCTGGTTTTATTCATTCGGAACCTTCCTATTAGCCAGC
TCAAATTTCTCCTCTTGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_b10.b1 MSMg01no184_b10.b1 CHROMAT_FILE:
MSMg01no184_b10.b1 PHD_FILE: MSMg01no184_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:18 2005
         (313 letters)



>mm_chr14_34225240_34225952
          Length = 713

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaagaatttctggagtgtgagttttgctgggggagaggctgggagtttgttaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaagaatttctggagtgtgagttttgctgggggagaggctgggagtttgttaa 263

                                                                       
Query: 64  agcaatgataacaagaaactgacacccaactgaatttctttttttaaaagatgatttatt 123
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 264 agcaatgataacaagaaactgacacccaaatgaatttctttttttaaaagatgatttatt 323

                                                                       
Query: 124 tttattttatgtgaattggtgtttttccggcatgtgtgtctatgtgaaggtgttggatct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttattttatgtgaattggtgtttttccggcatgtgtgtctatgtgaaggtgttggatct 383

                                                                       
Query: 184 tctagagctgcaattatagacagttgtgagctgccatgagggtgcttggaattgaatctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctagagctgcaattatagacagttgtgagctgccatgagggtgcttggaattgaatctg 443

                                                                       
Query: 244 ggtcctgtggaataacagccaatgctcttatctgctgagccacctcttcaggcctccaac 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 ggtcctgtggaataacagccaatgctcttaactgctgagccacctcttcaggcctccaac 503

                     
Query: 304 tgacaatttc 313
           ||||||||||
Sbjct: 504 tgacaatttc 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)