BAC Information

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BAC

Clone NameMSMg01-184M04
Chromosome14 (Build37)
Map Location 58,516,989 - 58,637,984
singlet/doubletdoublet
Overlap geneEfha1
Upstream geneZmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20
Downstream geneLOC668160, Fgf9, LOC100043554, EG668177, EG668182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184M04.T7 (MSMg01no184_m04.b1)MSMg01-184M04.TJ (MSMg01no184_m04.g1)
ACCAG376950AG376951
length734722
length of high quality
(start - end)
316 (60 - 375)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no184_m04.b1 PHD_FILE: MSMg01no184_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:16 2005CHROMAT_FILE: MSMg01no184_m04.g1 PHD_FILE: MSMg01no184_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,516,989 - 58,517,299)(58,637,704 - 58,637,984)
sequence
NNNNNNNNCCATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTCAAGTGCATTGTCAAGGCCCGACATGACTG
TTGGGGAAGTAGAAAGCTGAGAACTGTCTAAGCAACCACAAAATGAGTCA
GGACAAGATGGTGCTATGCCAGTCACTTCACCTGGATGGGTTATTAAAGA
TGAAAAAGAAAAAGAAGGGCATAATAATTAATTAAAGTGTTTGAAGAAGA
CAGTGCTGGATGGTGACCAGCACAGCTCACAAGTAATACATCCCCAGAGA
GAATTGGGATAAGCACTGGGTGTGGCCCCAAGGCTGCCACATTTCCTACC
TTCTAGATCCTGAGTTCTGTAACTGATGTCCAGATCTTACCACAACTGAC
TCCATGATGGAAGTGCCATTCAGGCTACACAGCGCCCCAGATGTCAGTCT
GACACAGCCCAGGAGAAACTTTTATATGTATAATATCTGACTTCCTATTC
TCCAATATTAGGAACGTCTCTGGGATTACATAAGTTTCCTTTGTATCTAA
GCAAGGTTGTACATTTTCCTTGTTTTTAATTTTTAAATTTTTGTTTTTTG
AGACAGGATTTCTCTGAGTAACCCTGCCTGTTTTGCAACTTGTTCTGTAT
ACTAGGCTAGCACTGAATTCTCGACCCATCTTATTTTTACTCATCCCTTC
ACTTTTATGTACCCTCATCTCATCTTTTTACGAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAATCCAAGCAACTTGAGTCT
CTGCTACCTCCCTGCCACCTGGGAGCGCTGCTAATGGATCCATAGGATGA
GGTGCTGTGTGCTAGCTCCACCTGTTGTTGAAAAGCTGACATGACTGTGA
CTTGGAACTACAAATTGGACTGGTATTGGCTTTAAGATAGAACTACCATT
TTAACTATGGCAGGAGCACCATGGCAGGAAAGCATACCAAGAAATTGCAC
TTTTCCTTCAATTTATTCATGATTTACAAAGACTATTTTCATTTTGTGCC
ATTCCATTTTTCTCCCCCCCCCCCCCCCACCCAAAAGGGGGTGAAGCATG
TGTATGCTGCATACATGCCCCCACTGTTATAAAGCACCCTACTGCCCTTT
CAGACAACGAAGCTCCAATTTGTTAATAACCACTTGGTCCCTATTCTTCT
GTCATGTCAGCTCCCAACCTCTAACCCCCATTCTTTTTCCCATCACCTCT
CTCANTTTTCCCCCCACTGGATTCGACTTCTTTCATCCACACTTTTATAA
AACACACCTCATTCCCTCTCGCCCANTTTTTTTATTTGAAAATCCCTCCC
CCACTCACCCCTCTCTCCTTCCCCACTTTATTATCTAGTCCAATCCTTAC
CCTTTTGTTAATATACCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_m04.b1 MSMg01no184_m04.b1 CHROMAT_FILE:
MSMg01no184_m04.b1 PHD_FILE: MSMg01no184_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:16 2005
         (316 letters)



>mm_chr14_58516786_58517501
          Length = 716

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcaagtgcattgtcaaggcccgacatgactgttggggaagtagaaagctgaga 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaagtgcgttgtcaaggcccgacatgactgttggggaagtagaaagctgaga 263

                                                                       
Query: 64  actgtctaagcaaccacaaaatgagtcaggacaagatggtgctatgccagtcacttcacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actgtctaagcaaccacaaaatgagtcaggacaagatggtgctatgccagtcacttcacc 323

                                                                       
Query: 124 tggatgggttattaaagatgaaaaagaaaaagaagggcataataattaattaaagtgttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggatgggttattaaagatgaaaaagaaaaagaagggcataataattaattaaagtgttt 383

                                                                       
Query: 184 gaagaagacagtgctggatggtgaccagcacagctcacaagtaatacatccccagagaga 243
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 384 gaagaagacagtgctggatggtgaccagcacggctcacaagtaatacatccccagagaga 443

                                                                       
Query: 244 attgggataagcactgggtgtggccccaaggctgccacatttcctaccttctagatcctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 attgggataagcactgggtgtggccccaaggctgccacatttcctaccttccagatcctg 503

                      
Query: 304 agttctgtaac 314
           |||||||||||
Sbjct: 504 agttctgtaac 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no184_m04.g1 MSMg01no184_m04.g1 CHROMAT_FILE:
MSMg01no184_m04.g1 PHD_FILE: MSMg01no184_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:16 2005
         (281 letters)



>mm_chr14_58637504_58638184
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaatccaagcaacttgagtctctgctacctccctgccacctgggagcgctgctaatg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 481 tctgaatccaagcaacttgagtctctgctacatccctgccacctgggagcgctgctaatg 422

                                                                       
Query: 61  gatccataggatgaggtgctgtgtgctagctccacctgttgttgaaaagctgacatgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatccataggatgaggtgctgtgtgctagctccacctgttgttgaaaagctgacatgact 362

                                                                       
Query: 121 gtgacttggaactacaaattggactggtattggctttaagatagaactaccattttaact 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 361 gtgacttggaactacaaattggactggtattggctttaagatagaactaccattgtaact 302

                                                                       
Query: 181 atggcaggagcaccatggcaggaaagcataccaagaaattgcacttttccttcaatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atggcaggagcaccatggcaggaaagcataccaagaaattgcacttttccttcaatttat 242

                                                    
Query: 241 tcatgatttacaaagactattttcattttgtgccattccat 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcatgatttacaaagactattttcattttgtgccattccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)