BAC Information

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BAC

Clone NameMSMg01-184P13
Chromosome14 (Build37)
Map Location 88,525,510 - 88,717,927
singlet/doubletdoublet
Overlap geneLOC100043780
Upstream geneDiap3, EG665324, Tdrd3, LOC100043317
Downstream geneLOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184P13.T7 (MSMg01no184_p13.b1)MSMg01-184P13.TJ (MSMg01no184_p13.g1)
ACCAG377099AG377100
length714735
length of high quality
(start - end)		311 (61 - 371)659 (77 - 735)
definitionCHROMAT_FILE: MSMg01no184_p13.b1 PHD_FILE: MSMg01no184_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:33 2005CHROMAT_FILE: MSMg01no184_p13.g1 PHD_FILE: MSMg01no184_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,717,621 - 88,717,927)(88,525,510 - 88,526,168)
sequence
ATTGANCNNAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCACTGGCACAGATAATACTTTAGCTTAACA
AAATTATAAATGCATAAAAATGGTTGAAAGGGATGAAGAATTTCTTGCCA
GAACAAGAACTTGAAACATGCAACTGCTTTGACATCATCTCTTTTTTTTA
TACTCTGCAAAGAATGTTAGCTTAATCCATATACTTTCCATGAAATTATT
TACTGTAATGATACAAAGGAGTGTGGAAGCATAAGATAAGAAATATTTCT
GAAAGTCTAAATACACATTATTTCCTATGCACCTCCCTCACCTCCTCACT
ATGTATATGAACGAGAGATTCTCATTTGTTTCACCTCTGACATTTCCTAC
ATTTTATATCAATCTCAATTGGCTCCAGAGCTCTCTAGATATGTTTCATT
TTATTTCTTGGGGAAAGCTTCACAACAACTTAACTCTCACTCTTTGATAT
AGCTGCATCCTTTCTACTTGAGCCTCCACCACAGTGAATTCTTCTCCTTG
GCTTAGTAAGACCCTGAAAAGTCCATTTCATTTAAATCCCTTTTGTCAGA
TGGAGTGTTTGAGTGTTCCTTACTAAGGATATAACAACTATTTTAAAGAG
GAATAGCATTTCTGTACTCATGCCCCATTCATTTCACGAACATTAAATGC
TGTGAAAAGGCTAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATTCTACTTCTTGTGAGTCT
TTTAAAAGAAGGATCGCTTGATTCTGCATTCCAATTTGATAATGAGAATA
GATTTTCAGTAAATTTTAATATATGATTTTTGGCTGGAGATTTTATACAG
TATCCCCAATATGTTGATATTCTATAAAATATATATGAAATACTAAAATT
ATAAAAAATACAATTTTTACAATTGAAAAATAAAAAGTCTACAAATTTTA
TTTAAATTACTTTTACTTACTATGAGTACCATGTGAAATTAGTGTGATAA
GGGTAAGGTCTGTTCAAATGTACCTAATTTTATCCCATATTCTTCTTTCT
ACTTAATATCCAATATGAAATGCATTTACTTGAAATGAATATATGGAGCA
AGACAGTTTTTATGACCTAAATAACAAGCCTATGTCTGATACCAAGTATC
CACCTGAAATGCAGACTTGGAGTTGTTCAGCCCATCTTTAATTAGAATTA
CCAAGTAGAATTATTGAAAAATGCTTAAATGTAGTTTCTAACTATAAACA
TTGGCTTTTGAGGTGCTTTGCTCTGCGTAATTATTAATTAATGCCATTTC
CAAGTAAATACTATATGACATGTTCACACATATTGAGAGATATGATTTAT
TCTATTCCTTATAACACAGAGAAAATATAAGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_p13.b1 MSMg01no184_p13.b1 CHROMAT_FILE:
MSMg01no184_p13.b1 PHD_FILE: MSMg01no184_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:33 2005
         (311 letters)



>mm_chr14_88717417_88718127
          Length = 711

 Score =  594 bits (307), Expect = e-174
 Identities = 307/307 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccactggcacagataatactttagcttaacaaaattataaatgcataaaaatggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattccactggcacagataatactttagcttaacaaaattataaatgcataaaaatggt 452

                                                                       
Query: 65  tgaaagggatgaagaatttcttgccagaacaagaacttgaaacatgcaactgctttgaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgaaagggatgaagaatttcttgccagaacaagaacttgaaacatgcaactgctttgaca 392

                                                                       
Query: 125 tcatctcttttttttatactctgcaaagaatgttagcttaatccatatactttccatgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcatctcttttttttatactctgcaaagaatgttagcttaatccatatactttccatgaa 332

                                                                       
Query: 185 attatttactgtaatgatacaaaggagtgtggaagcataagataagaaatatttctgaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 attatttactgtaatgatacaaaggagtgtggaagcataagataagaaatatttctgaaa 272

                                                                       
Query: 245 gtctaaatacacattatttcctatgcacctccctcacctcctcactatgtatatgaacga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gtctaaatacacattatttcctatgcacctccctcacctcctcactatgtatatgaacga 212

                  
Query: 305 gagattc 311
           |||||||
Sbjct: 211 gagattc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no184_p13.g1 MSMg01no184_p13.g1 CHROMAT_FILE:
MSMg01no184_p13.g1 PHD_FILE: MSMg01no184_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:34 2005
         (659 letters)



>mm_chr14_88525310_88526368
          Length = 1059

 Score = 1266 bits (655), Expect = 0.0
 Identities = 658/659 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaattctacttcttgtgagtcttttaaaagaaggatcgcttgattctgcattccaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaattctacttcttgtgagtcttttaaaagaaggatcgcttgattctgcattccaatt 260

                                                                       
Query: 61  tgataatgagaatagattttcagtaaattttaatatatgatttttggctggagattttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgataatgagaatagattttcagtaaattttaatatatgatttttggctggagattttat 320

                                                                       
Query: 121 acagtatccccaatatgttgatattctataaaatatatatgaaatactaaaattataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagtatccccaatatgttgatattctataaaatatatatgaaatactaaaattataaaa 380

                                                                       
Query: 181 aatacaatttttacaattgaaaaataaaaagtctacaaattttatttaaattacttttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacaatttttacaattgaaaaataaaaagtctacaaattttatttaaattacttttac 440

                                                                       
Query: 241 ttactatgagtaccatgtgaaattagtgtgataagggtaaggtctgttcaaatgtaccta 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ttactatgagtaccatgtgaaattagtgtgataagggtaaggtctgttcaaatgtagcta 500

                                                                       
Query: 301 attttatcccatattcttctttctacttaatatccaatatgaaatgcatttacttgaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttatcccatattcttctttctacttaatatccaatatgaaatgcatttacttgaaat 560

                                                                       
Query: 361 gaatatatggagcaagacagtttttatgacctaaataacaagcctatgtctgataccaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatatatggagcaagacagtttttatgacctaaataacaagcctatgtctgataccaag 620

                                                                       
Query: 421 tatccacctgaaatgcagacttggagttgttcagcccatctttaattagaattaccaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatccacctgaaatgcagacttggagttgttcagcccatctttaattagaattaccaagt 680

                                                                       
Query: 481 agaattattgaaaaatgcttaaatgtagtttctaactataaacattggcttttgaggtgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaattattgaaaaatgcttaaatgtagtttctaactataaacattggcttttgaggtgc 740

                                                                       
Query: 541 tttgctctgcgtaattattaattaatgccatttccaagtaaatactatatgacatgttca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgctctgcgtaattattaattaatgccatttccaagtaaatactatatgacatgttca 800

                                                                      
Query: 601 cacatattgagagatatgatttattctattccttataacacagagaaaatataagttta 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cacatattgagagatatgatttattctattccttataacacagagaaaatataagttta 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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