BAC Information

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BAC

Clone NameMSMg01-185J16
Chromosome14 (Build37)
Map Location 93,528,094 - 93,576,513
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252
Downstream geneLOC668566, LOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185J16.T7 (MSMg01no185_j16.b1)MSMg01-185J16.TJ (MSMg01no185_j16.g1)
ACCAG377544AG377545
length755763
length of high quality
(start - end)		314 (59 - 372)559 (77 - 635)
definitionCHROMAT_FILE: MSMg01no185_j16.b1 PHD_FILE: MSMg01no185_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:21 2005CHROMAT_FILE: MSMg01no185_j16.g1 PHD_FILE: MSMg01no185_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,576,205 - 93,576,513)(93,528,094 - 93,528,651)
sequence
GTGAAGGGAAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCAAATGAAGATGTATAATTTTACATGGTGATGT
TAACGTTGGAATTGTACTTTCTGATTACTTCCTCTCTCTAATTTATGACT
GTGAATTCACAACCTGATGACTCAGTTCAAAACAAAAATAAAGGTCATGC
CAGATTCATATAATTGCTGAAGCATCTATATAGTCATAGGACCATTATTG
ACTAAGCCTTAATTATCAACAATACAAACATACCCATGAAATACACAAAA
TGATAAAGATACCCTGACACAGAGAGTGAGAACCAGCATTGTGTTTCAGG
GATCTACCAGAGACCATTGCTTATTGTGACCCCCCACCACAGAGACAGAC
AACATGACTAATAGCATCACCACCCTGCCATTGACTAAGAAGGACAATTA
AAGTAGCCTTGTCCATGAAGTGCTATGGCTCCCCTTATCAGATGCAGACA
GAGTAGATAAAATGTCCATGATGGAAGGATAACAGAAAGACAAGGCGAAA
AGAGGAAGAGACAGAATCCATTAAAACATAGGCGAATTGAGGAACTTCAA
TGCACACTTTGTGAACAAGGAAGACAAGGTTTGTGACTTTCATGGCACTG
ATTGACATCAACAGACTACTTTATACTTTAAAAATTAAAACATAGTGAAA
CTGTCAATGGCTCAGGGTGTCGTATTAATATCCACTGTTTACTTCTGATT
ATCAA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACTTCATATTTTAGTTAGTTCC
ACTGGCTCCTATCCAATTTTTATTCTTTTGTTAACAGAGTAAAAATAATA
TGGATGGGTTTCAGTAGATTGGAGGCTGGCTATAGTTAAGTTGCCCTAGA
TATCTAAAACAATTTAGTGGAAAGTTTAAGTCATTCAATGCCTGAGTTAA
ACATACAGAAACTGATAAATTATTGGTTGCACCTATGTGCAAAAGGATAT
TCTTGGAATGTTCTGTAAAGATTTAGACTAACAGTCTTATTATTACTAAA
AACCAGTTTCTCATTGAAAAACATTGCTTTGCATGTTCAACACCACATAT
CATATCTGTCTGAAACTGATACAACACCAAGTATCTGACAAAAGAAAATT
GCAGGTTTTTCTAATTAAGTATTTTCCAAAATTTATCATCACCCCGCTAC
ACACATGATTCATAGGATGCAGTGTATTTATCTGTATGCAAGTTGGGATT
TAGTATATGTACCTATGAAATTAATAATCTTATCAATAGATCACATTTTA
CTAATGTTAATATATCTATATGCTCAAATTTGACTAGTAAAAAGGACTTA
TTGACATATAGGCAAAACTGTTCCTTACATAAAATTTCTTAGAACAAATT
AATCATCTTATAATTCTTAAAGACACTATCTTAAAGTCTACCTTATAAAA
CTCCCCCCTAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_j16.b1 MSMg01no185_j16.b1 CHROMAT_FILE:
MSMg01no185_j16.b1 PHD_FILE: MSMg01no185_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:21 2005
         (314 letters)



>mm_chr14_93576002_93576715
          Length = 714

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaatgaagatgtataattttacatggtgatgttaacgttggaattgtactttc 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggaattcaaatgaggatgtataattttacatggtgatgttaacgttggaattgtactttc 453

                                                                       
Query: 64  tgattacttcctctctctaatttatgactgtgaattcacaacctgatgactcagttcaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgattacttcctctctctaatttatgactgtgaattcacaacctgatgactcagttcaaa 393

                                                                       
Query: 124 acaaaaataaaggtcatgccagattcatataattgctgaagcatctatatagtcatagga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 acaaaaataaaggtcatgccagattcatataattgctgaagcatctatatagtcatagga 333

                                                                       
Query: 184 ccattattgactaagccttaattatcaacaatacaaacatacccatgaaatacacaaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccattattgactaagccttaattatcaacaatacaaacatacccatgaaatacacaaaat 273

                                                                       
Query: 244 gataaagataccctgacacagagagtgagaaccagcattgtgtttcagggatctaccaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gataaagataccctgacacagagagtgagaaccagcattgtgtttcagggatctaccaga 213

                    
Query: 304 gaccattgc 312
           |||||||||
Sbjct: 212 gaccattgc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no185_j16.g1 MSMg01no185_j16.g1 CHROMAT_FILE:
MSMg01no185_j16.g1 PHD_FILE: MSMg01no185_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:21 2005
         (559 letters)



>mm_chr14_93527894_93528852
          Length = 959

 Score =  994 bits (514), Expect = 0.0
 Identities = 547/558 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacttcatattttagttagttccactggctcctatccaatttttattcttttgttaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacttcatattttagttagttccactggctcctatccaatttttattcttttgttaaca 260

                                                                       
Query: 61  gagtaaaaataatatggatgggtttcagtagattggaggctggctatagttaagttgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtaaaaataatatggatgggtttcagtagattggaggctggctatagttaagttgccc 320

                                                                       
Query: 121 tagatatctaaaacaatttagtggaaagtttaagtcattcaatgcctgagttaaacatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagatatctaaaacaatttagtggaaagtttaagtcattcaatgcctgagttaaacatac 380

                                                                       
Query: 181 agaaactgataaattattggttgcacctatgtgcaaaaggatattcttggaatgttctgt 240
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 agaaactgataaataattggttgcacctatgtgcaaaaagatattcttggaatgttctgt 440

                                                                       
Query: 241 aaagatttagactaacagtcttattattactaaaaaccagtttctcattgaaaaacattg 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagattcagactaacagtcttattattactaaaaaccagtttctcattgaaaaacattg 500

                                                                       
Query: 301 ctttgcatgttcaacaccacatatcatatctgtctgaaactgatacaacaccaagtatct 360
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 501 ctttgcatgttcaacaccacatatcatatctgtctgaaactgatataagaccaagtatct 560

                                                                       
Query: 361 gacaaaagaaaattgcaggtttttctaattaagtattttccaaaatttatcatcaccccg 420
           |||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| 
Sbjct: 561 gacaaaagaaaattgcaggtttttctaattaagtattttctataattcatcatcacccca 620

                                                                       
Query: 421 ctacacacatgattcataggatgcagtgtatttatctgtatgcaagttgggatttagtat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctacacacatgattcataggatgcagtgtatttatctgtatgcaagttgggatttagtat 680

                                                                       
Query: 481 atgtacctatgaaattaataatcttatcaatagatcacattttactaatgttaatatatc 540
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 681 atgtacctatgaaattaataatcttatcaataaatcatattttactaatgttaatatatc 740

                             
Query: 541 tatatgctcaaatttgac 558
           ||||||||||||||||||
Sbjct: 741 tatatgctcaaatttgac 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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