BAC Information

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BAC

Clone NameMSMg01-185L10
Chromosome14 (Build37)
Map Location 123,681,048 - 123,681,356
singlet/doubletsinglet
Overlap geneVgcnl1
Upstream geneClybl, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneItgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185L10.T7 (MSMg01no185_l10.b1)MSMg01-185L10.TJ (MSMg01no185_l10.g1)
ACCAG377618AG377619
length755882
length of high quality
(start - end)
315 (62 - 376)211 (78 - 288)
definitionCHROMAT_FILE: MSMg01no185_l10.b1 PHD_FILE: MSMg01no185_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:29 2005CHROMAT_FILE: MSMg01no185_l10.g1 PHD_FILE: MSMg01no185_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGCCCGGNNNNGAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCAGCAAAAGAGGCCAAAAGATCTACAGTCA
TCCTGCTACAGGTCTGACCCCAGGATATCTGGAAGTGCTTTACAAGGAAG
AGCCAGATCAGGTTTAGGCAGACACTGAGACAGGACCAATGATTGAGGGG
ATGTAATGATTCCAGAACTCTCAAAAAGGTAGTCCAAAAATCAAGTGGAG
GGAAACGCCTAATATGGTGTAAAAACCAGGACAGTGAGGGGTTGGAGAGA
CACCAGCTATTCCAGAGGACCCAAGTGCCATTACCAGTTTCCACATCTGA
CAGCTCACAACCACCCATAGCTCTTGANATACGCCATNNACTANNNCCTT
CTAGTCCTTGTGGGTAACTGTACATGTATGCCCCACACAAAAAAAAACAC
ACACGCGCGCGCGCGGACACACACTCACAAATAAAGTAAATCTAAAAAAT
ATGATGACTATGGTTAAGAGAGAGTTGAATTAGAGATGGGAGCAAACTGC
CTTGCAATCCTCAGCATCAGCTAGTCCTGGGTTTGGGCTTCCCCAGGGCA
TATCATAGAGCTCTGTCCACCAAGATGCATCTTCTGGAGCTCCTGGTTCT
GACCTTTAAGCTGGCATAAGTCCATGTCCACATAACATCCTGCCCCTGAA
ATCCTGTCTCTCCCCAAAGGGGCTTTCCCCTTGCCTAATGTTTCACTCAT
GTCTA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATC
ATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAATGAGAT
GATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGA
TGGATTTCCACATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACT
TGGTCAGGATGGATGATTGCTTTAATGCGTTCTTGGATTCGCTTAGTGAG
AATTTTAATGAGCATTTTTCCATCTATATTTTTTTCTTATATTAACTACA
TATATTTCTCTTTCGTCATTATTTTTCTCTTTTCTTCCTTGCTGTATTTT
TATTATATATTATTTTTTTGATTTTCCCCCCCCCCCCCTATTATCTTTCT
TTTATTATTTTCCTAACTTTTTTTATTCTCTCTTATTGTTTNTTTTTCTT
CCTTTTTTCTTTTTATAAATTCTCTCTTAGTTTTTTCTCTCACCCGTATT
TCTTTCCTTATATATTTCTATTTTAATATATATCATCTCAACCTATCTTT
TTTTCTTATTTTTTATATCTTTATTAAATATATCTTTTTACCTAATTATT
CTACTATAATATTCTATTCTTAATTCTATATAGATCAAATTCTTTTTCAT
TTTATATATATTATTCTATATAACAAATCAATTCTATTACAACAAATAAT
ATTACAACATCATCTTTCTTATTTATATTATATTTTTTTTTTTCTCCTAA
ATATATTCTATTATCTCTTCATATTCCTGTCTAATTTTTATCTATATACT
TATCCTATTATATATGTTTTTATTTATTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_l10.b1 MSMg01no185_l10.b1 CHROMAT_FILE:
MSMg01no185_l10.b1 PHD_FILE: MSMg01no185_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:29 2005
         (315 letters)



>mm_chr14_123680913_123681627
          Length = 715

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcaaaagaggccaaaagatctacagtcatcctgctacaggtctgaccccagga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaattcagcaaaagaggccaaaagatctacagtcatcctgctacaggtctgaccccagga 385

                                                                       
Query: 65  tatctggaagtgctttacaaggaagagccagatcaggtttaggcagacactgagacagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatctggaagtgctttacaaggaagagccagatcaggtttaggcagacactgagacagga 325

                                                                       
Query: 125 ccaatgattgaggggatgtaatgattccagaactctcaaaaaggtagtccaaaaatcaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaatgattgaggggatgtaatgattccagaactctcaaaaaggtagtccaaaaatcaag 265

                                                                       
Query: 185 tggagggaaacgcctaatatggtgtaaaaaccaggacagtgaggggttggagagacacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 tggagggaaacgcctaatatggtgtaaaaaccaggacagtgaggggttgaagagacacca 205

                                                                       
Query: 245 gctattccagaggacccaagtgccattaccagtttccacatctgacagctcacaaccacc 304
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 204 gctattccagaggacccaagtgccattaccagcacccacatctgacagctcacaaccacc 145

                    
Query: 305 catagctct 313
           |||||||||
Sbjct: 144 catagctct 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)