BAC Information

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BAC

Clone NameMSMg01-186F19
Chromosome14 (Build37)
Map Location 121,604,960 - 121,754,019
singlet/doubletdoublet
Overlap geneFarp1, Stk24
Upstream geneMbnl2, Rap2a, LOC668835, LOC668837, Ranbp5, LOC100043837
Downstream geneSlc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186F19.T7 (MSMg01no186_f19.b1)MSMg01-186F19.TJ (MSMg01no186_f19.g1)
ACCAG378070AG378071
length749754
length of high quality
(start - end)		330 (44 - 373)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no186_f19.b1 PHD_FILE: MSMg01no186_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:19 2005CHROMAT_FILE: MSMg01no186_f19.g1 PHD_FILE: MSMg01no186_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,753,724 - 121,754,019)(121,604,960 - 121,605,249)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGTCTGTTAGCCTGTGTGCGTGGTGTGTGCATGTGCACATGTGTGC
ACATGTGCCTGTGAGCCCAGTGCCAATGGAGGCCACAGGTTTTGGATCCT
CTGACCTGGAGTCATTAGCGTTCTGAGCCACTTGATGTGGTTGCTGGGAT
CAAAATCAGATTGAACTTGGGTCCTCTGGAAGGGCACTGTGAGGTCTTAA
CTGCGGAGTGACCTCTCCAGCCCTCAGCCTGGCCTTTTTGATTTCTTACA
CTCTTCCCCCTCTCCCAAAACAGAATTGTTGGAACCCTGCTTTTCCCACA
GAATAAAGGTTTATTGTTACCACTACACCAGGGAAATCGGTAACCACTGT
TAGCATTTTATTGCACACCTTCCTGTGTGTACATCTTACATCTTTCTGTA
AATGTAGACATCGTTGCCTCTTCCCCTCGGCTGATACAGAATCAGTTCCT
GCTATCTGGTTGGCTACCTGAGGTGTATCTGATTTGACTCCGAGGAGTCT
TTGTTCCCCCCCTCAGGCTTGTGCGATGAATGCTTGCTCTCTGTCTGGTG
ACTGTATTTTTTATAGCATCCTTCAACTACACTATTATACTTATCTTTCC
TTATTTTTTCTACTATATATTTATCCTTCCTTTTTTATTTTCCCTCCTCT
TCCTTTCTTCCCCTTATTTTCACTCATACCTCTTTCTATTTTCTCCCCT

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGGAAATATGAGTGCCTGCCA
GCTGGGCAGAAAATTGGCGAATCCTAAAACAAGCAGACAGTGTTGGAAGT
TATGAAACGGACTGTAGTCTTTCTTAAAATAAAGAAATAAAGAAAATGGA
AATGCTGTACGGCATAGGAATTCTTCCACAACTTCATACCCCCATGGTCC
GTTTTTAAAAGAATTTTTTTTTGTTAAGGTGTTTGAATTGTGCTGGAGTT
AATGAAAGAAAGAAGATTCCAAGAAAAAAAAATGGCAACCCATAAGCTTA
ATCATGCATCTTCTTGTTTTTTGTCCGCCCCCCCCCCCGCCTAGAACCAA
GGATTAGTCTAAGCAGACCCCCCCCCCAGCCTAAAAGAAAAATGTCCGTA
ATGGGGACAGCATATTGTAAACAGCATAGAACAGAACCACAGTGGCAGAA
AGCAGGGTTCGCGGACCTCTTTTATGACCCTTCTTTTGTATAACTTTGCT
GGCCTTCCTTACTTTGGTACAAACAGAACACTATTTTATTTTTCCTCCTA
ATTCTTTTTCCTTTTTTTTTTTCCTCACTTCACTTCTCTATTCCATATTC
CTTTATTTACTTAGTTTTCATATTTCTTCCCATCTCTTGCCCTCTCCTCC
TCCTTCCTTATTTTTCCTTTCTCCCCGCCTTCTTATTCTTTCTTCCCCCT
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_f19.b1 MSMg01no186_f19.b1 CHROMAT_FILE:
MSMg01no186_f19.b1 PHD_FILE: MSMg01no186_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:19 2005
         (330 letters)



>mm_chr14_121753294_121754023
          Length = 730

 Score =  565 bits (292), Expect = e-165
 Identities = 295/296 (99%)
 Strand = Plus / Minus

                                                                       
Query: 35  tgtgtgcatgtgcacatgtgtgcacatgtgcctgtgagcccagtgccaatggaggccaca 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tgtgtgcatgtgcacatgtgtgcacatgtgcctgtgagcccagtgccaatggaggccaca 667

                                                                       
Query: 95  ggttttggatcctctgacctggagtcattagcgttctgagccacttgatgtggttgctgg 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ggttttggatcctctgacctggagtcattagcgttctgagccacttgatgtggttgctgg 607

                                                                       
Query: 155 gatcaaaatcagattgaacttgggtcctctggaagggcactgtgaggtcttaactgcgga 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gatcaaaatcagattgaacttgggtcctctggaagggcactgtgaggtcttaactgcgga 547

                                                                       
Query: 215 gtgacctctccagccctcagcctggcctttttgatttcttacactcttccccctctccca 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtgacctctccagccctcagcctggcctttttgatttcttacactcttccccctctccca 487

                                                                   
Query: 275 aaacagaattgttggaaccctgcttttcccacagaataaaggtttattgttaccac 330
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 486 aaacagaattgttggaaccctgcttttcccacagaataaaggtttagtgttaccac 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no186_f19.g1 MSMg01no186_f19.g1 CHROMAT_FILE:
MSMg01no186_f19.g1 PHD_FILE: MSMg01no186_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:19 2005
         (293 letters)



>mm_chr14_121604760_121605452
          Length = 693

 Score =  514 bits (266), Expect = e-150
 Identities = 284/290 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgggaaatatgagtgcctgccagctgggcagaaaattggcgaatcctaaaacaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgggaaatatgagtgcctgccagctgggcagaaaattggcgaatcctaaaacaagcag 260

                                                                       
Query: 61  acagtgttggaagttatgaaacggactgtagtctttcttaaaataaagaaataaagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtgttggaagttatgaaacggactgtagtctttcttaaaataaagaaataaagaaaa 320

                                                                       
Query: 121 tggaaatgctgtacggcataggaattcttccacaacttcatacccccatggtccgttttt 180
            ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 aggaaacgctgtacggcataggaattcttccacagcttcatacccccatggtccgttttt 380

                                                                       
Query: 181 aaaagaatttttttttgttaaggtgtttgaattgtgctggagttaatgaaagaaagaaga 240
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagaatggttttttgttaaggtgtttgaattgtgctggagttaatgaaagaaagaaga 440

                                                             
Query: 241 ttccaagaaaaaaaaatggcaacccataagcttaatcatgcatcttcttg 290
           ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccaggaaaaaaaaatggcaacccataagcttaatcatgcatcttcttg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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