BAC Information

Click to search

BAC

Clone NameMSMg01-186J02
Chromosome14 (Build37)
Map Location 91,080,040 - 91,080,682
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328451, LOC100043336
Downstream geneEG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186J02.T7 (MSMg01no186_j02.b1)MSMg01-186J02.TJ (MSMg01no186_j02.g1)
ACCAG378211AG378212
length704738
length of high quality
(start - end)
659 (46 - 704)643 (76 - 718)
definitionCHROMAT_FILE: MSMg01no186_j02.b1 PHD_FILE: MSMg01no186_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:35 2005CHROMAT_FILE: MSMg01no186_j02.g1 PHD_FILE: MSMg01no186_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCCGAGGAATACCGAATGGCAGAGAAACACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATT
CCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCA
GATGTTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AATACTACTCAGCTATTAAAAAAAATGAATTCATGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAG
GAACTCGCACAATATGTACTCATTGATAAGTGGATAATAGCCCAGAAACT
TACGATACCCAAGATATAAGATACAACTTGCCAAACGCATGAAATTCAAG
AAGA
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGGATATTTCAAAATAGATAATTT
TATTTTAAAGAATTGCCTGCAGAAATTACTTAGCTTGGCAAAGTAATTTC
AGAGATCTCTAAGATAATCAAATATAATTCATGCCACCTGTGGCTTTTTG
AGTAAATTATTTATAACAAGTGCGTGCTATTGCTGCTTGTGAAACTAAAA
CAAGTCTGTTTATGCCGAAAGTAGAGTTCACTTATTTTCTTTATTTTTCC
TAAATATGACCTGAAATGCAAATTCATTGGGAAAGCATTAATTAAGCAGA
GAGAGTAAATGAAGTATGCTAATATGCAATGATTCTAAACTACCACAGGG
TGGTAGAAGATTCACTTTCCACAACATTTATCTAATTGGCAGAATTAACT
GCTTTGCTACGCTTCTCCTGCTTTCAAATCCCTCTTCAAAAACTCTATTA
TTGCTCTGTTCATTAAGTGTGAAGAAATCACAGAGGAAAAACCACAGTTT
AACATAAACTATACTTCAACAAAAGTCACATTGAAATAAAGAACAATATT
CATATAGTAGATGTATATTTTGACTTATTTAAATCTTTCTCTTATTCATA
ANAATGATGATTTGTCTTTATTGATAAATAAAAAGAAGACTCATGGAATA
CATGAGATTATTGTGTAAGTGCTGTCCTATAAAGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_j02.g1 MSMg01no186_j02.g1 CHROMAT_FILE:
MSMg01no186_j02.g1 PHD_FILE: MSMg01no186_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:35 2005
         (643 letters)



>mm_chr14_91079840_91080882
          Length = 1043

 Score = 1237 bits (640), Expect = 0.0
 Identities = 642/643 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggatatttcaaaatagataattttattttaaagaattgcctgcagaaattacttagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggatatttcaaaatagataattttattttaaagaattgcctgcagaaattacttagct 260

                                                                       
Query: 61  tggcaaagtaatttcagagatctctaagataatcaaatataattcatgccacctgtggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcaaagtaatttcagagatctctaagataatcaaatataattcatgccacctgtggct 320

                                                                       
Query: 121 ttttgagtaaattatttataacaagtgcgtgctattgctgcttgtgaaactaaaacaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgagtaaattatttataacaagtgcgtgctattgctgcttgtgaaactaaaacaagt 380

                                                                       
Query: 181 ctgtttatgccgaaagtagagttcacttattttctttatttttcctaaatatgacctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtttatgccgaaagtagagttcacttattttctttatttttcctaaatatgacctgaa 440

                                                                       
Query: 241 atgcaaattcattgggaaagcattaattaagcagagagagtaaatgaagtatgctaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcaaattcattgggaaagcattaattaagcagagagagtaaatgaagtatgctaatat 500

                                                                       
Query: 301 gcaatgattctaaactaccacagggtggtagaagattcactttccacaacatttatctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaatgattctaaactaccacagggtggtagaagattcactttccacaacatttatctaa 560

                                                                       
Query: 361 ttggcagaattaactgctttgctacgcttctcctgctttcaaatccctcttcaaaaactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggcagaattaactgctttgctacgcttctcctgctttcaaatccctcttcaaaaactc 620

                                                                       
Query: 421 tattattgctctgttcattaagtgtgaagaaatcacagaggaaaaaccacagtttaacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattattgctctgttcattaagtgtgaagaaatcacagaggaaaaaccacagtttaacat 680

                                                                       
Query: 481 aaactatacttcaacaaaagtcacattgaaataaagaacaatattcatatagtagatgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaactatacttcaacaaaagtcacattgaaataaagaacaatattcatatagtagatgta 740

                                                                       
Query: 541 tattttgacttatttaaatctttctcttattcataanaatgatgatttgtctttattgat 600
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 tattttgacttatttaaatctttctcttattcataaaaatgatgatttgtctttattgat 800

                                                      
Query: 601 aaataaaaagaagactcatggaatacatgagattattgtgtaa 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaataaaaagaagactcatggaatacatgagattattgtgtaa 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)