BAC Information

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BAC

Clone NameMSMg01-187I18
Chromosome14 (Build37)
Map Location 67,586,423 - 67,586,709
singlet/doubletsinglet
Overlap geneLOC672614
Upstream geneClu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2
Downstream geneBnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187I18.T7 (MSMg01no187_i18.b1)MSMg01-187I18.TJ (MSMg01no187_i18.g1)
ACCAG378859AG378860
length752742
length of high quality
(start - end)
310 (46 - 355)341 (77 - 417)
definitionCHROMAT_FILE: MSMg01no187_i18.b1 PHD_FILE: MSMg01no187_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:53 2005CHROMAT_FILE: MSMg01no187_i18.g1 PHD_FILE: MSMg01no187_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:53 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACATCATCTCCAGGTTGTAGGGTTTCTAGGTCACCTTTAAATTC
ACTATAGTGAAAGAATATCTCTTTTACAACATCACCTCTTTCGATAAAGC
CAAATGCCTCCTTCATGGCACAAACTACTCCTTGACAGTGAGCCTGTTTC
TTTTTCAACAGCATAATATTACGAGCACTTACAGCACCAGTGTGTTTATT
GTTATCAATTACAAAGTTAATTTTATCTCCAGTTTCCAGCTGAACATTCC
CTTCCACATCTTCAGAGGTGTAAGTCAGATAAAATACTTCTTGTCCGTTC
ATTCGTTCTTCAGTATCGCCTTCCTGCCCTTATCTTCACCAATTTAATAG
CACTAGGTTTCCCCCCCCTCAGAAAAAAAGATACTTCAAATTCAACATCA
TCTCCTACTTTTAAGTCTTGGAGGTTGCCATTATATTGTGAACAGTGGAA
GAAAAGTCTAGCTTGCCGTTCTGAACACTGAATGAATCCGTAAGAGGTCA
AGAGTTTTTCAATAACCCCAGTTTCATGAAGTGCTGCTGAAGTACCATTG
GGATACCCATTGTGTCCATTGTTGTGGAGAAGGTTTGGATCAAAGCTCAT
TCTTGCAGCGATAATCAAATATTGTGCTTTCAGAAGCATTTGCTGACTCT
TCTTTTTTCAGCACAAGTTCCAAAGGACGAAAGTTGCTAGTATTTTTTTT
TT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCGCATTTTTGGAAGATAGGTG
GGAAACAGGGAGAAGGAGTGACCGGCTCTTGTAGTACAAGGCCAATTGGC
TTTTTTATTTGGGTGGGAGGCAGTGAAGGGCTTGCCCTTTCAATAGTACG
TCTCCAATCTCTCTCCCCCCTATAATTAAGTTAAATAAGGCAACGCTTAA
CTGAGGTGATCAAATGATTTTCTCATCCGTAGATGAGTGGGCTTTTAACC
TTGGCTTGGGTGGACATGGACCCGATTCCTCCCGTGGGTAAAACCCACAC
ATGTGGCTCTCGGTATCTTTTGGGGAGGCAAGGTAGAGCCGGAAAATATT
TTTTATTTTTAACCAAAATACCCCCACCAACCTCTTTTAAACCGGGTTTA
TCTCACAGGAAACTCAGAAATGGTCAAGCTGGACCTTCCCTTGCAGTAAG
TATCTCTGCACCAAGCGGTGCCCATACTGAATTTGTACAATCACAAACCA
GTATGCACAGTTCTGAGTGCTGTGCAGCTCCTAAAGGAGAATTATCAACC
TCAGAATTAGCAAAGCCTAAGCAAGAATTATGTCGTTAATAACACCACGA
TTTGTGGGTAAAATAGGAGCTGGAAGTCGTTCCTCCTCATCCCTGTTTTT
TCCACAGCCTATTGAGCTAATGACACCCTGCGCTATCATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_i18.b1 MSMg01no187_i18.b1 CHROMAT_FILE:
MSMg01no187_i18.b1 PHD_FILE: MSMg01no187_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:53 2005
         (310 letters)



>mm_chr14_67586219_67586927
          Length = 709

 Score =  410 bits (212), Expect = e-119
 Identities = 269/288 (93%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacatcatctccaggttgtagggtttctaggtcacctttaaattcactatagtg 64
           ||||||||  ||||||||||| || ||||||||||||||||||||| |||||||||||||
Sbjct: 491 gaattccatgtcatctccaggctgcagggtttctaggtcacctttagattcactatagtg 432

                                                                       
Query: 65  aaagaatatctcttttacaacatcacctctttcgataaagccaaatgcctccttcatggc 124
           ||||| |||||||||||||||||||||||||||||||||||||||  ||||| |||||||
Sbjct: 431 aaagagtatctcttttacaacatcacctctttcgataaagccaaacacctcc-tcatggc 373

                                                                       
Query: 125 acaaactactccttgacagtgagcctgtttctttttcaacagcataatattacgagcact 184
           ||| ||||||||||| ||| |||| ||||||||||||||||||||||| | |||||||||
Sbjct: 372 acacactactccttggcagcgagcttgtttctttttcaacagcataatgtgacgagcact 313

                                                                       
Query: 185 tacagcaccagtgtgtttattgttatcaattacaaagttaattttatctccagtttccag 244
           ||||||| | ||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 312 tacagcatctgtgtgtttattgttattgattacaaagttaattttatctccagtttccag 253

                                                           
Query: 245 ctgaacattcccttccacatcttcagaggtgtaagtcagataaaatac 292
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctgaacattcccttccacatcttcagaggtgtaagtcagataaaatac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 709
Length adjustment: 9
Effective length of query: 301
Effective length of database: 700
Effective search space:   210700
Effective search space used:   210700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)